Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000280`

染色体: Chr05 坐标: 2174313-2180007 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000280`
名称	SmilChr05G000280
描述	uncharacterized SmilChr05G000280
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2174313 - 2180007 / `+`

ID 对照

NCBI Gene ID	`LOC130985005`
GeneID	`130985005`
locus_tag	`-`
NCBI Name	`LOC130985005`
原始查询	`SmilChr05G000280`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841930]; symbol=AT1G54920; hit=AT1G54920; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841930]; symbol=AT1G54920; hit=AT1G54920; species=arabidopsis; confidence=low
Arabidopsis	`AT1G54920` (AT1G54920) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841930] identity=32.6; qcov=0.602; evalue=1.33e-72; confidence=low
Rice	`Os11g0148400` - identity=33; qcov=0.366; evalue=3.02e-43; confidence=low
GO	-
KEGG	-
Pfam	PF25999 (SYNRG_C)
InterPro	-
eggNOG	-
NR	GeneID:130985005

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057763712.1`
2	Cytosol	细胞质基质	0.60000	`XP_057763712.1`
3	Cytoplasm	细胞质	0.40000	`XP_057763713.1`
4	Trans-golgi network	Trans-golgi network	0.40000	`XP_057763712.1`
5	Nucleus	细胞核	0.00000	`XP_057763712.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2174545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B27,B64
`Chr5:2174609`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C69,C74
`Chr5:2174680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr5:2174693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B139,B3,C29,C62,C81
`Chr5:2174714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B3,B80,C68
`Chr5:2174775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:2174776`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B3,B80,C32,C68
`Chr5:2174821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B24,C81
`Chr5:2174967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:2175160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr5:2175184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B48
`Chr5:2175788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763712.1

880 aa

440

880

SYNRG_C

PF25999 SYNRG_C 688-874 aa

XP_057763713.1

876 aa

438

876

SYNRG_C

PF25999 SYNRG_C 684-870 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763712.1`	Pfam	`PF25999`	SYNRG_C	Domain	688	874	6.2e-54	183.5	Synergin gamma, C-terminal domain
`XP_057763713.1`	Pfam	`PF25999`	SYNRG_C	Domain	684	870	6.1e-54	183.5	Synergin gamma, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907730.1
AAAAGGAGAAGAAAAAATTTGAGAATGAAAAGAAATGAAAGCATTCATAACCGACTGTAACAATAAAATATGCAGCAGTAGCAGTAGAAACCCATTTTAATGGCAGATCGATTTGCTCAGTGACTCGCAACGTAAAGCAAACGCACCTTTTCCCTTTTCAGGATTAACTCGCAGAAGAGGCGCAATCGATCCGCGTCCTTCTCCATATGGCGGAGGACGACGACGATGAGGCGTTCGGAGATTTCGCTTTTGCTCCCTTC...

XM_057907729.1
GGAGAAGAAAAAATTTGAGAATGAAAAGAAATGAAAGCATTCATAACCGACTGTAACAATAAAATATGCAGCAGTAGCAGTAGAAACCCATTTTAATGGCAGATCGATTTGCTCAGTGACTCGCAACGTAAAGCAAACGCACCTTTTCCCTTTTCAGGATTAACTCGCAGAAGAGGCGCAATCGATCCGCGTCCTTCTCCATATGGCGGAGGACGACGACGATGAGGCGTTCGGAGATTTCGCTTTTGCTCCCTTCCAAT...

CDS

2 records

下载 CDS FASTA

LOC130985005
ATGGCGGAGGACGACGACGATGAGGCGTTCGGAGATTTCGCTTTTGCTCCCTTCCAATCGAATTCCCTAATCAGCGTTCCGAATTCGTCGGCCGCCCCCGCCGACGAGGACGAGTGGGGCGATTTCGTGGAACCGCCGTCGCAGTCGAAGCCATCGGGAACCGCTGTCAATGGAGATCACCGATCGGGTAATTCTGCATCGCCGGCTACGTGGATGAAGCCGCGAGGCGCTCTGCCTCTTTCGCTATTTGGTGATGCGGA...

Protein

2 records

下载 Protein FASTA

XP_057763712.1
MAEDDDDEAFGDFAFAPFQSNSLISVPNSSAAPADEDEWGDFVEPPSQSKPSGTAVNGDHRSGNSASPATWMKPRGALPLSLFGDAEESGDLAVPGDFNREERNGGAEVVGSGLAGNGVLKSKSFSIADLYDRYSQTKHESRDLAVKDDSVVNGVYSSGNQASGEAAVVELKNAEFSFKSYMSDPSKEEDLFGGWTGEFNGIGSNLKTSPENVLMLGLDLDMNGEKQQLDGSNTAVGDEGDGDDGDEEWDFKDADSEFEA...

XP_057763713.1
MAEDDDDEAFGDFAFAPFQSNSLISVPNSSAAPADEDEWGDFVEPPSQSKPSGTAVNGDHRSGNSASPATWMKPRGALPLSLFGDAEESGDLAVPGDFNREERNGGAEVVGSGLAGNGVLKSKSFSIADLYDRYSQTKHESRDLAVKDDSVVNGVYSSGNQASGEAAVVELKNAEFSFKSYMSDPSKEEDLFGGWTGEFNGIGSNLKTSPENVLMLGLDLDMNGEKQQLDGSNTAVGDEGDGDDGDEEWDFKDADSEFEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器