当前解析结果
SmilChr05G000283| 统一新 Gene ID | SmilChr05G000283 |
|---|---|
| 名称 | SmilChr05G000283 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2188993 - 2192298 / - |
| NCBI Gene ID | LOC130985009 |
|---|---|
| GeneID | 130985009 |
| locus_tag | - |
| NCBI Name | LOC130985009 |
| 原始查询 | SmilChr05G000283 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=25.8; qcov=1.02; evalue=5.74e-74; confidence=low |
| Rice | Os11g0633500- identity=31.2; qcov=0.618; evalue=2.54e-62; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985009 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057763726.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057763726.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057763726.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057763726.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057763726.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2189541 |
A |
AG |
1bp_insertion | frameshift_variant | 12 | B102,B117,B118,B122,B140,B47,B83,C36,C47,C49,C56,C80 |
Chr5:2189546 |
CGA |
C |
2bp_deletion | frameshift_variant | 4 | A2,B109,B71,C58 |
Chr5:2189546 |
CGA |
C |
2bp_deletion | CDS_variant | 4 | A2,B109,B71,C58 |
Chr5:2189549 |
AC |
A |
1bp_deletion | frameshift_variant | 17 | A8,B103,B117,B118,B120,B140,B20,B45,B47,B8,B83,C38,C47,C49,C56,C64,C80 |
Chr5:2189561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B109,B71,C58 |
Chr5:2189651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr5:2189681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B53,C29 |
Chr5:2189705 |
T |
TG |
1bp_insertion | frameshift_variant | 16 | B117,B122,B33,B64,B74,B80,B83,B88,B91,B92,C31,C56,C62,C63,C67,C72 |
Chr5:2189738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C52 |
Chr5:2189740 |
AAC |
A |
2bp_deletion | frameshift_variant | 1 | C40 |
Chr5:2189740 |
AAC |
A |
2bp_deletion | CDS_variant | 1 | C40 |
Chr5:2189750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,C24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763726.1PF00931
NB-ARC 151-317 aa
PF13401
AAA_22 167-254 aa
PF23559
WHD_DRP 402-471 aa
XP_057763727.1PF00931
NB-ARC 151-317 aa
PF13401
AAA_22 167-254 aa
PF23559
WHD_DRP 402-471 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763726.1 |
Pfam | PF00931 |
NB-ARC | Domain | 151 | 317 | 1.5e-38 | 132.8 | NB-ARC domain |
XP_057763726.1 |
Pfam | PF13401 |
AAA_22 | Domain | 167 | 254 | 1.1e-06 | 29.7 | AAA domain |
XP_057763726.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 402 | 471 | 1.2e-19 | 70.8 | Disease resistance protein Winged helix domain |
XP_057763727.1 |
Pfam | PF00931 |
NB-ARC | Domain | 151 | 317 | 1.5e-38 | 132.8 | NB-ARC domain |
XP_057763727.1 |
Pfam | PF13401 |
AAA_22 | Domain | 167 | 254 | 1.1e-06 | 29.7 | AAA domain |
XP_057763727.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 402 | 471 | 1.2e-19 | 70.8 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。