Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000284`

染色体: Chr05 坐标: 2193001-2197230 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000284`
名称	SmilChr05G000284
描述	putative late blight resistance protein homolog R1B-16
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2193001 - 2197230 / `-`

ID 对照

NCBI Gene ID	`LOC130985008`
GeneID	`130985008`
locus_tag	`-`
NCBI Name	`LOC130985008`
原始查询	`SmilChr05G000284`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-16
产物	putative late blight resistance protein homolog R1B-16
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=25.9; qcov=1.04; evalue=5.72e-72; confidence=low
Rice	`Os11g0633500` - identity=31.5; qcov=0.622; evalue=1.01e-65; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP)
InterPro	-
eggNOG	-
NR	GeneID:130985008

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057763714.1`
2	Nucleus	细胞核	0.00000	`XP_057763714.1`
3	Chromosome	染色体	0.00000	`XP_057763714.1`
4	Centromere	着丝粒	0.00000	`XP_057763714.1`
5	Chromatin	染色质	0.00000	`XP_057763714.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2194571`	`CGT`	`C`	2bp_deletion	frameshift_variant	4	B125,B73,C77,D11
`Chr5:2194571`	`CGT`	`C`	2bp_deletion	CDS_variant	4	B125,B73,C77,D11
`Chr5:2194626`	`TC`	`*`	1bp_deletion	CDS_variant	4	B140,B29,B71,B74
`Chr5:2194650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr5:2194652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B106,B57,B83,B92
`Chr5:2194674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C14,C79
`Chr5:2194723`	`A`	`AAG`	2bp_insertion	frameshift_variant	17	B106,B117,B119,B15,B16,B32,B63,B65,B69,B75,B89,C28,C36,C39,C42,C50,C69
`Chr5:2194751`	`G`	`GA`	1bp_insertion	frameshift_variant	8	B12,B28,B29,B51,B70,B72,C61,D8
`Chr5:2194755`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B28,B29,B70,B72,C61
`Chr5:2194755`	`TC`	`T`	1bp_deletion	CDS_variant	5	B28,B29,B70,B72,C61
`Chr5:2194758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B138,C21,C44,C79,C8
`Chr5:2194786`	`C`	`CT`	1bp_insertion	frameshift_variant	1	C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763714.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763715.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763716.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763717.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763719.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763720.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763721.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763722.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763723.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763724.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

XP_057763725.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 169-331 aa PF23559 WHD_DRP 417-488 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763714.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763714.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763715.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763715.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763716.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763716.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763717.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763717.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763719.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763719.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763720.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763720.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763721.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763721.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763722.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763722.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763723.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763723.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763724.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763724.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain
`XP_057763725.1`	Pfam	`PF00931`	NB-ARC	Domain	169	331	1.8e-41	142.3	NB-ARC domain
`XP_057763725.1`	Pfam	`PF23559`	WHD_DRP	Domain	417	488	1.4e-19	70.6	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XM_057907739.1
GAAACAATACTTCATGTGGCCACACTTTGAGAATTCATAATTTATCTCATCTCATCTCATATTCTCTCTGCAACAACCAAAACAACCATGGCAGCAGCTTATGCAGCTCTTGTTTCTGCTATGAATATCATAAACAACCTTCACCATCATCCCCGTCCACCTGTTTCTCTCCCCATTAAACAAGTTGAATACCTCACTCAAAAAATCAGTTTCCTGCTGGAATTTCTCGAGGGGTATAACCCCCATCGTGGCTACTCCAA...

XM_057907733.1
GAAACAATACTTCATGTGGCCACACTTTGAGAATTCATAATTTATCTCATCTCATCTCATATTCTCTCTGCAACAACCAAAACAACCATGGCAGCAGCTTATGCAGCTCTTGTTTCTGCTATGAATATCATAAACAACCTTCACCATCATCCCCGTCCACCTGTTTCTCTCCCCATTAAACAAGTTGAATACCTCACTCAAAAAATCAGTTTCCTGCTGGAATTTCTCGAGGGGTATAACCCCCATCGTGGCTACTCCAA...

CDS

11 records

下载 CDS FASTA

LOC130985008
ATGGCAGCAGCTTATGCAGCTCTTGTTTCTGCTATGAATATCATAAACAACCTTCACCATCATCCCCGTCCACCTGTTTCTCTCCCCATTAAACAAGTTGAATACCTCACTCAAAAAATCAGTTTCCTGCTGGAATTTCTCGAGGGGTATAACCCCCATCGTGGCTACTCCAAAGAAGCGGATCCATTGGAGTCTCGCATTGCAGATGCAGCTTATGCGGCCGAATACGCCATTGAATCTCATATTTTGAATAATGGAGA...

Protein

11 records

下载 Protein FASTA

XP_057763714.1
MAAAYAALVSAMNIINNLHHHPRPPVSLPIKQVEYLTQKISFLLEFLEGYNPHRGYSKEADPLESRIADAAYAAEYAIESHILNNGENMSYLSIRKIKKKLKKIVYGGLYEALEKVIEDMASIEEEAKQIQERVGVQHQLHTKSTPSDSSRSSIPQQSIMVGAEDVKLQMMDKLTSDLLHLQIIPVVGMGGSGKTTLARTVYEERLIKEHFDICAWATISQEYAIREIFAAVLRQINIALDDDLNDDELGEMLYKHLYGR...

XP_057763715.1
MAAAYAALVSAMNIINNLHHHPRPPVSLPIKQVEYLTQKISFLLEFLEGYNPHRGYSKEADPLESRIADAAYAAEYAIESHILNNGENMSYLSIRKIKKKLKKIVYGGLYEALEKVIEDMASIEEEAKQIQERVGVQHQLHTKSTPSDSSRSSIPQQSIMVGAEDVKLQMMDKLTSDLLHLQIIPVVGMGGSGKTTLARTVYEERLIKEHFDICAWATISQEYAIREIFAAVLRQINIALDDDLNDDELGEMLYKHLYGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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