Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000290

染色体: Chr05 坐标: 2223581-2226239 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000290
名称SmilChr05G000290
描述uncharacterized SmilChr05G000290
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向2223581 - 2226239 / -

ID 对照

NCBI Gene IDLOC130985015
GeneID130985015
locus_tag-
NCBI NameLOC130985015
原始查询SmilChr05G000290

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:7922548]; symbol=AT3G05345; hit=AT3G05345; species=arabidopsis; confidence=high
产物Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:7922548]; symbol=AT3G05345; hit=AT3G05345; species=arabidopsis; confidence=high
ArabidopsisAT3G05345 (AT3G05345)
Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:7922548]
identity=67.9; qcov=0.768; evalue=5.84e-77; confidence=high
RiceOs05g0529700 (OsDjC50)
-
identity=30.3; qcov=0.422; evalue=8.42e-07; confidence=low
GO-
KEGG-
PfamPF00226 (DnaJ)
InterPro-
eggNOG-
NRGeneID:130985015

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057763733.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057763733.1
3 Mitochondrion 线粒体 0.40000 XP_057763734.1
4 Cytoplasm 细胞质 0.20000 XP_057763734.1
5 Cytosol 细胞质基质 0.20000 XP_057763734.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:2223831 C T EMS_canonical_SNV CDS_variant 2 B62,B89
Chr5:2223847 G A EMS_canonical_SNV CDS_variant 2 A19,C8
Chr5:2223882 C T EMS_canonical_SNV CDS_variant 1 B136
Chr5:2224054 C T EMS_canonical_SNV CDS_variant 1 B28
Chr5:2225089 A AG 1bp_insertion frameshift_variant 3 C24,C72,D6
Chr5:2225089 A AG 1bp_insertion CDS_variant 3 C24,C72,D6
Chr5:2225101 GT G 1bp_deletion frameshift_variant 1 C74
Chr5:2225101 GT G 1bp_deletion CDS_variant 1 C74
Chr5:2225124 AC A 1bp_deletion frameshift_variant 99 A1,A11,A15,A19,A2,A20,A3,A5,A6,A8,B101,B103,B104,B107,B108,B109,B11,B114,B115,B117,B120,B121,B122,B126,B127,B128,B129,B131,B132,B139,B19,B2,B21,B25,B26,B28,B3,B30,B31,B37,B38,B39,B41,B42,B43,B44,B46,B49,B5,B52,B53,B55,B58,B63,B64,B7,B75,B77,B79,B8,B80,B82,B86,B89,B9,B97,B98,B99,C10,C11,C13,C14,C15,C2,C20,C22,C29,C3,C34,C4,C40,C48,C51,C52,C53,C55,C56,C59,C65,C69,C7,C70,C83,C87,C9,D10,D4,D8,D9
Chr5:2225944 G A EMS_canonical_SNV CDS_variant 3 A6,B100,B120
Chr5:2225996 G A EMS_canonical_SNV CDS_variant 3 C74,C85,D11
Chr5:2226042 TGA T 2bp_deletion frameshift_variant 1 A19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057763733.1
280 aa
N
1
140
280
DnaJ
C
PF00226 DnaJ 81-138 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057763733.1 Pfam PF00226 DnaJ Domain 81 138 7.3e-13 49.1 DnaJ domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057907750.1
AAAAAACAGTTAAATTTACAGAAAAAAGCTAAAGAAAAGCCATCAATGGCGGCAGTTGCTCCTAATGAAAAGTGACAACTCTGGTTTCCTTCCCCTTCTATCAAAAATGGATCCTATTTCACTCTGCAATCGGAATTCACTTGCAACCTCACCGCCGCTCTCTGTCTTCTCTACTTTCAACGACACTCACGCTCATCACTTTCGCCTCAAACTCTTTTCTTCTTCTCCATCTAGACTGCGCTGCAGTTATAATGGCGGAA...
XM_057907751.1
AAAACAGTTAAATTTACAGAAAAAAGCTAAAGAAAAGCCATCAATGGCGGCAGTTGCTCCTAATGAAAAGTGACAACTCTGGTTTCCTTCCCCTTCTATCAAAAATGGATCCTATTTCACTCTGCAATCGGAATTCACTTGCAACCTCACCGCCGCTCTCTGTCTTCTCTACTTTCAACGACACTCACGCTCATCACTTTCGCCTCAAACTCTTTTCTTCTTCTCCATCTAGACTGCGCTGCAGTTATAATGGCGGAAAA...

CDS

2 records

下载 CDS FASTA
LOC130985015
ATGAAAAGTGACAACTCTGGTTTCCTTCCCCTTCTATCAAAAATGGATCCTATTTCACTCTGCAATCGGAATTCACTTGCAACCTCACCGCCGCTCTCTGTCTTCTCTACTTTCAACGACACTCACGCTCATCACTTTCGCCTCAAACTCTTTTCTTCTTCTCCATCTAGACTGCGCTGCAGTTATAATGGCGGAAAAATTGCTGATACGGATGATGATGAGCCGCTCACCCTTTCTCGGGCCTATGGCGTGCTCGGACT...
LOC130985015
ATGCTCGTCTGCACAAATAAAAGCTGCTTTTCGAGCCAAAGCGAAGCAGTTTCATCCGGATGTGATGGGAGGTGCTCAGGAATCGGATGCGATGATTCGCCGTGTGATTCAAGCATACGAGGCCTTCTGCTGCATATGTGGTGGCACTCTCTTCTAACCAACAGAATTTGTTATATCAAACAGATTTTATCCAACTACAGCAAATCAGAAATTATTGAAAGGGAATGTATGGATCCATTTGAGCAACCAGAGTGTGAGGC...

Protein

2 records

下载 Protein FASTA
XP_057763733.1
MKSDNSGFLPLLSKMDPISLCNRNSLATSPPLSVFSTFNDTHAHHFRLKLFSSSPSRLRCSYNGGKIADTDDDEPLTLSRAYGVLGLTPQCSSAQIKAAFRAKAKQFHPDVMGGAQESDAMIRRVIQAYEILSNYSKSEIIERECMDPFEQPECEAYDVFINEVLCMGKGCPYSCVSTAPHAFRFSSATGTARATSQGHAGDYQVQRAVGQCPRSCMHYVTPSQRIILEELLDSILDMPYDTSAEAEFLYSLIVKARYEN...
XP_057763734.1
MLVCTNKSCFSSQSEAVSSGCDGRCSGIGCDDSPCDSSIRGLLLHMWWHSLLTNRICYIKQILSNYSKSEIIERECMDPFEQPECEAYDVFINEVLCMGKGCPYSCVSTAPHAFRFSSATGTARATSQGHAGDYQVQRAVGQCPRSCMHYVTPSQRIILEELLDSILDMPYDTSAEAEFLYSLIVKARYENNRYQTPKKKPKVSSKHVDWL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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