当前解析结果
SmilChr05G000302| 统一新 Gene ID | SmilChr05G000302 |
|---|---|
| 名称 | SmilChr05G000302 |
| 描述 | peptidyl-prolyl cis-trans isomerase PASTICCINO1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2302304 - 2309671 / + |
| NCBI Gene ID | LOC130985026 |
|---|---|
| GeneID | 130985026 |
| locus_tag | - |
| NCBI Name | LOC130985026 |
| 原始查询 | SmilChr05G000302 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peptidyl-prolyl cis-trans isomerase PASTICCINO1-like |
| 产物 | peptidyl-prolyl cis-trans isomerase PASTICCINO1-like |
| Arabidopsis | AT3G54010 (PAS1)FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824568] identity=68.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0367000 (OsFKBP72)- identity=65.6; qcov=0.987; evalue=0; confidence=high |
| GO | GO:0003755 (peptidyl-prolyl cis-trans isomerase activity); GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00254 (FKBP_C); PF13181 (TPR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985026 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057763757.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057763757.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057763757.1 |
| 4 | Nucleoplasm | 核质 | 0.60000 | XP_057763757.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057763757.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2302516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A8,B49,B98 |
Chr5:2302883 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C82 |
Chr5:2302883 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C82 |
Chr5:2302892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B126,C3,C30,C52 |
Chr5:2302926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:2303402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B44,C20,C57 |
Chr5:2303450 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,C36 |
Chr5:2305345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B82,B91,B95,D2 |
Chr5:2305419 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr5:2305972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr5:2306244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:2306290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763757.1PF00254
FKBP_C 44-144 aa
PF00254
FKBP_C 169-258 aa
PF00254
FKBP_C 293-380 aa
PF13181
TPR_8 458-482 aa
PF13181
TPR_8 484-514 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763757.1 |
Pfam | PF00254 |
FKBP_C | Domain | 44 | 144 | 6e-46 | 155.4 | FKBP-type peptidyl-prolyl cis-trans isomerase |
XP_057763757.1 |
Pfam | PF00254 |
FKBP_C | Domain | 169 | 258 | 6e-46 | 155.4 | FKBP-type peptidyl-prolyl cis-trans isomerase |
XP_057763757.1 |
Pfam | PF00254 |
FKBP_C | Domain | 293 | 380 | 6e-46 | 155.4 | FKBP-type peptidyl-prolyl cis-trans isomerase |
XP_057763757.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 458 | 482 | 1.4e-08 | 34.9 | Tetratricopeptide repeat |
XP_057763757.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 484 | 514 | 1.4e-08 | 34.9 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。