当前解析结果
SmilChr05G000314| 统一新 Gene ID | SmilChr05G000314 |
|---|---|
| 名称 | SmilChr05G000314 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2364580 - 2367893 / + |
| NCBI Gene ID | LOC130985033 |
|---|---|
| GeneID | 130985033 |
| locus_tag | - |
| NCBI Name | LOC130985033 |
| 原始查询 | SmilChr05G000314 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=26.8; qcov=1.04; evalue=3.63e-74; confidence=low |
| Rice | Os11g0633500- identity=30.9; qcov=0.62; evalue=9.79e-67; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985033 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057763766.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057763766.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057763766.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057763766.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057763766.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2364757 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | C56 |
Chr5:2364757 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | C56 |
Chr5:2364758 |
TCC |
T |
2bp_deletion | frameshift_variant | 8 | A18,B100,B12,B41,B76,C59,C82,C84 |
Chr5:2364763 |
T |
TAA |
2bp_insertion | frameshift_variant | 7 | A18,B100,B12,B41,B76,C59,C82 |
Chr5:2364858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,C2,C84 |
Chr5:2364860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B132,B59,C21,C65 |
Chr5:2364863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C2,C57,C71,D3 |
Chr5:2364887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr5:2364904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,B22 |
Chr5:2364972 |
A |
ATC |
2bp_insertion | frameshift_variant | 18 | A1,B10,B109,B127,B5,B56,B66,B7,B83,C15,C17,C35,C50,C52,C64,C7,C73,D1 |
Chr5:2364979 |
ATC |
A |
2bp_deletion | frameshift_variant | 5 | B136,B22,B48,C25,C7 |
Chr5:2364979 |
ATC |
A |
2bp_deletion | CDS_variant | 5 | B136,B22,B48,C25,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763766.1PF00931
NB-ARC 166-328 aa
PF23559
WHD_DRP 412-479 aa
XP_057763767.1PF00931
NB-ARC 166-328 aa
PF23559
WHD_DRP 412-479 aa
XP_057763768.1PF00931
NB-ARC 166-328 aa
PF23559
WHD_DRP 412-479 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763766.1 |
Pfam | PF00931 |
NB-ARC | Domain | 166 | 328 | 3.8e-39 | 134.7 | NB-ARC domain |
XP_057763766.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 412 | 479 | 1.2e-18 | 67.6 | Disease resistance protein Winged helix domain |
XP_057763767.1 |
Pfam | PF00931 |
NB-ARC | Domain | 166 | 328 | 3.8e-39 | 134.7 | NB-ARC domain |
XP_057763767.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 412 | 479 | 1.2e-18 | 67.6 | Disease resistance protein Winged helix domain |
XP_057763768.1 |
Pfam | PF00931 |
NB-ARC | Domain | 166 | 328 | 3.8e-39 | 134.7 | NB-ARC domain |
XP_057763768.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 412 | 479 | 1.2e-18 | 67.6 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。