当前解析结果
SmilChr05G000317| 统一新 Gene ID | SmilChr05G000317 |
|---|---|
| 名称 | SmilChr05G000317 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2377531 - 2379708 / + |
| NCBI Gene ID | LOC131024772 |
|---|---|
| GeneID | 131024772 |
| locus_tag | - |
| NCBI Name | LOC131024772 |
| 原始查询 | SmilChr05G000317 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=27.3; qcov=1.02; evalue=4.59e-65; confidence=low |
| Rice | Os11g0633500- identity=37.3; qcov=0.495; evalue=2.96e-69; confidence=medium |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024772 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810294.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057810294.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057810294.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057810294.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057810294.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2377549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B46,C33,C78 |
Chr5:2377715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B30 |
Chr5:2377757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,B7 |
Chr5:2377775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr5:2377785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,D11 |
Chr5:2377843 |
A |
AT |
1bp_insertion | frameshift_variant | 9 | A20,A8,B101,B131,B140,B16,C62,C86,D4 |
Chr5:2377850 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,D10 |
Chr5:2377851 |
AG |
A |
1bp_deletion | frameshift_variant | 9 | A20,A8,B101,B131,B140,B16,B44,C62,D4 |
Chr5:2377855 |
T |
TG |
1bp_insertion | frameshift_variant | 10 | A20,A8,B101,B131,B140,B16,B44,C62,C86,D4 |
Chr5:2377862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr5:2377866 |
G |
GT |
1bp_insertion | frameshift_variant | 5 | A20,B101,B131,B16,C62 |
Chr5:2377866 |
G |
GT |
1bp_insertion | CDS_variant | 5 | A20,B101,B131,B16,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810294.1PF00931
NB-ARC 45-208 aa
PF13401
AAA_22 60-146 aa
PF23559
WHD_DRP 293-360 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810294.1 |
Pfam | PF00931 |
NB-ARC | Domain | 45 | 208 | 7e-42 | 143.7 | NB-ARC domain |
XP_057810294.1 |
Pfam | PF13401 |
AAA_22 | Domain | 60 | 146 | 3.7e-07 | 31.2 | AAA domain |
XP_057810294.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 293 | 360 | 3.1e-19 | 69.5 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。