Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000319`

染色体: Chr05 坐标: 2391126-2397540 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000319`
名称	SmilChr05G000319
描述	protein MEI2-like 5
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2391126 - 2397540 / `+`

ID 对照

NCBI Gene ID	`LOC130985038`
GeneID	`130985038`
locus_tag	`-`
NCBI Name	`LOC130985038`
原始查询	`SmilChr05G000319`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein MEI2-like 5
产物	protein MEI2-like 5
Arabidopsis	`AT1G29400` (ML5) MEI2-like protein 5 [Source:NCBI gene (formerly Entrezgene);Acc:839816] identity=58.5; qcov=0.96; evalue=0; confidence=high
Rice	`Os02g0719800` (ML2) - identity=55.4; qcov=0.995; evalue=0; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF04059 (RRM_2); PF13893 (RRM_5)
InterPro	-
eggNOG	-
NR	GeneID:130985038

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057763774.1`
2	Cytoplasm	细胞质	0.60000	`XP_057763774.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057763774.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057763774.1`
5	Cytosol	细胞质基质	0.20000	`XP_057763774.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2392914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B126
`Chr5:2392981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr5:2393876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B63,B8,C84
`Chr5:2395332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B51,B88,C25,C57
`Chr5:2395506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B51,B88,C25,C57
`Chr5:2395557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr5:2395575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B26,B28
`Chr5:2395685`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,D8
`Chr5:2395754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr5:2395860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr5:2395863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,B136
`Chr5:2395889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763774.1

817 aa

408

817

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 169-245 aa PF00076 RRM_1 176-240 aa PF13893 RRM_5 258-335 aa PF00076 RRM_1 261-326 aa PF04059 RRM_2 657-753 aa

XP_057763775.1

817 aa

408

817

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 169-245 aa PF00076 RRM_1 176-240 aa PF13893 RRM_5 258-335 aa PF00076 RRM_1 261-326 aa PF04059 RRM_2 657-753 aa

XP_057763776.1

817 aa

408

817

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 169-245 aa PF00076 RRM_1 176-240 aa PF13893 RRM_5 258-335 aa PF00076 RRM_1 261-326 aa PF04059 RRM_2 657-753 aa

XP_057763777.1

817 aa

408

817

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 169-245 aa PF00076 RRM_1 176-240 aa PF13893 RRM_5 258-335 aa PF00076 RRM_1 261-326 aa PF04059 RRM_2 657-753 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763774.1`	Pfam	`PF13893`	RRM_5	Domain	169	245	6.2e-11	42.8	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057763774.1`	Pfam	`PF00076`	RRM_1	Domain	176	240	6.1e-27	94.0	RNA recognition motif
`XP_057763774.1`	Pfam	`PF13893`	RRM_5	Domain	258	335	6.2e-11	42.8	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057763774.1`	Pfam	`PF00076`	RRM_1	Domain	261	326	6.1e-27	94.0	RNA recognition motif
`XP_057763774.1`	Pfam	`PF04059`	RRM_2	Family	657	753	2.7e-53	178.9	RNA recognition motif 2
`XP_057763775.1`	Pfam	`PF13893`	RRM_5	Domain	169	245	6.2e-11	42.8	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057763775.1`	Pfam	`PF00076`	RRM_1	Domain	176	240	6.1e-27	94.0	RNA recognition motif
`XP_057763775.1`	Pfam	`PF13893`	RRM_5	Domain	258	335	6.2e-11	42.8	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057763775.1`	Pfam	`PF00076`	RRM_1	Domain	261	326	6.1e-27	94.0	RNA recognition motif
`XP_057763775.1`	Pfam	`PF04059`	RRM_2	Family	657	753	2.7e-53	178.9	RNA recognition motif 2
`XP_057763776.1`	Pfam	`PF13893`	RRM_5	Domain	169	245	6.2e-11	42.8	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057763776.1`	Pfam	`PF00076`	RRM_1	Domain	176	240	6.1e-27	94.0	RNA recognition motif
`XP_057763776.1`	Pfam	`PF13893`	RRM_5	Domain	258	335	6.2e-11	42.8	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057763776.1`	Pfam	`PF00076`	RRM_1	Domain	261	326	6.1e-27	94.0	RNA recognition motif
`XP_057763776.1`	Pfam	`PF04059`	RRM_2	Family	657	753	2.7e-53	178.9	RNA recognition motif 2
`XP_057763777.1`	Pfam	`PF13893`	RRM_5	Domain	169	245	6.2e-11	42.8	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057763777.1`	Pfam	`PF00076`	RRM_1	Domain	176	240	6.1e-27	94.0	RNA recognition motif
`XP_057763777.1`	Pfam	`PF13893`	RRM_5	Domain	258	335	6.2e-11	42.8	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057763777.1`	Pfam	`PF00076`	RRM_1	Domain	261	326	6.1e-27	94.0	RNA recognition motif
`XP_057763777.1`	Pfam	`PF04059`	RRM_2	Family	657	753	2.7e-53	178.9	RNA recognition motif 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057907791.1
ATCACACCCAAACAGAGCTTACCGAAGATGGAATTGAAAGCAATAATATTTTTCTCTGCTTTCAGCCATTAAAGATTTCTTAAGCAAAAAATCTAATTATCAATTCACTTTAATAATCTTTTATAGGATTGTCAGATACCTCTTTCCCTCCAATCATTTCCCACTGTGCTTTCTCTTTGGACCACTTTGCCTTTGTGGGTCTCTATCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCTCTGTGCAAGTGTTGTTT...

XM_057907792.1
TGGGTCTCTATCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCTCTGTGCAAGTGTTGTTTATCTCTCTAAAAACAATTTTCTCTCTCCTCTCAAACATTAACTGGTGTTGCGGCGGGAGAGAAGGAAGTGAAAGAGTGGAAGTTAACAATTCCTCTGCTTCTACGTAAGTGGTGTTTTGTTTTCTTCTTCAGTTTTTCTCTCTAGCTTGTGAATTCATTTCTTTCTCTTCCTTGTTGACTTCTCTTTCCCACCAA...

CDS

4 records

下载 CDS FASTA

LOC130985038
ATGAGTACTGGAGGGAAAGAAAAAACCGCGTGGAAACTTCCTGGCAGAACTGATGCGTATCACGCATCTAGCGATGCTAGCTTGTTTTCTTCTTCATTGCCCGTGCTTTCACATGAGAAGCTTAATTTTAGTGCATCCAATCAAATTGGTGTGTCGCTGGATGACGGCTTTCCTAGCCTTAGCAAGCTACGGCTACAAGAAGAAGTATTGGATCCACTCGAAGAAATTGATCCGGGTATAACAGGAACTTTTCTCCCTGG...

Protein

4 records

下载 Protein FASTA

XP_057763774.1
MSTGGKEKTAWKLPGRTDAYHASSDASLFSSSLPVLSHEKLNFSASNQIGVSLDDGFPSLSKLRLQEEVLDPLEEIDPGITGTFLPGDEDELLAGLMDDFDLSGLPTQLEDLDDDFFGSGGGMEIEHETQENSVNGISRLSSDSIGISSIPQFGFANGVGSVSGEHPYGEHPSRTLFVRNINSNVEDSELKTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARSAMRGLQNKPLRRRKLDIHFSIPKDNPSEKDVNQGT...

XP_057763775.1
MSTGGKEKTAWKLPGRTDAYHASSDASLFSSSLPVLSHEKLNFSASNQIGVSLDDGFPSLSKLRLQEEVLDPLEEIDPGITGTFLPGDEDELLAGLMDDFDLSGLPTQLEDLDDDFFGSGGGMEIEHETQENSVNGISRLSSDSIGISSIPQFGFANGVGSVSGEHPYGEHPSRTLFVRNINSNVEDSELKTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARSAMRGLQNKPLRRRKLDIHFSIPKDNPSEKDVNQGT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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