当前解析结果
SmilChr05G000320| 统一新 Gene ID | SmilChr05G000320 |
|---|---|
| 名称 | SmilChr05G000320 |
| 描述 | ribose-phosphate pyrophosphokinase 4 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2398726 - 2402146 / - |
| NCBI Gene ID | LOC130985039 |
|---|---|
| GeneID | 130985039 |
| locus_tag | - |
| NCBI Name | LOC130985039 |
| 原始查询 | SmilChr05G000320 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ribose-phosphate pyrophosphokinase 4 |
| 产物 | ribose-phosphate pyrophosphokinase 4 |
| Arabidopsis | AT2G42910 (AT2G42910)Phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818892] identity=79.4; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0714600- identity=77.5; qcov=1; evalue=3.19e-175; confidence=high |
| GO | GO:0000287 (magnesium ion binding); GO:0002189 (ribose phosphate diphosphokinase complex); GO:0004749 (ribose phosphate diphosphokinase activity); GO:0005737 (cytoplasm); GO:0006015 (5-phosphoribose 1-diphosphate biosynthetic process); GO:0006164 (purine nucleotide biosynthetic process) |
| KEGG | - |
| Pfam | PF00156 (Pribosyltran); PF13793 (Pribosyltran_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985039 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057763778.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057763779.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057763779.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057763778.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057763778.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2398989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B11,B38,B39,B45 |
Chr5:2399052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C38 |
Chr5:2399074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,B7,D7 |
Chr5:2399075 |
C |
CA |
1bp_insertion | frameshift_variant | 51 | A22,A23,A6,B102,B106,B11,B111,B117,B125,B129,B131,B2,B21,B27,B34,B36,B38,B39,B44,B51,B55,B56,B57,B61,B63,B68,B72,B74,B77,B78,B8,B9,B93,B96,B98,C13,C14,C17,C28,C3,C37,C42,C52,C53,C57,C73,C76,C81,C85,C9,D1 |
Chr5:2399076 |
A |
AC |
1bp_insertion | frameshift_variant | 175 | A1,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A25,A4,A5,A6,A7,A8,A9,B10,B100,B101,B102,B103,B105,B107,B11,B110,B112,B113,B114,B117,B118,B119,B12,B121,B122,B124,B125,B126,B127,B128,B130,B131,B133,B135,B136,B137,B138,B14,B140,B16,B17,B18,B19,B22,B24,B25,B27,B28,B3,B32,B33,B34,B35,B37,B40,B41,B45,B46,B47,B49,B5,B50,B52,B53,B54,B55,B58,B6,B60,B62,B63,B65,B67,B7,B71,B72,B73,B74,B75,B76,B78,B79,B8,B81,B83,B84,B85,B86,B89,B9,B90,B91,B92,B93,B97,B98,B99,C10,C11,C12,C13,C14,C15,C17,C20,C21,C22,C23,C26,C27,C29,C3,C30,C31,C33,C34,C35,C38,C39,C4,C41,C43,C44,C47,C48,C49,C5,C50,C51,C54,C56,C58,C59,C60,C61,C62,C64,C65,C66,C67,C69,C7,C70,C71,C74,C75,C79,C8,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D6,D8 |
Chr5:2399081 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B36 |
Chr5:2399081 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B36 |
Chr5:2399146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr5:2399149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B38,B39 |
Chr5:2399258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:2399675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,D6 |
Chr5:2399718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763778.1PF13793
Pribosyltran_N 10-123 aa
PF00156
Pribosyltran 214-258 aa
XP_057763779.1PF13793
Pribosyltran_N 10-123 aa
PF00156
Pribosyltran 214-263 aa
XP_057763780.1PF13793
Pribosyltran_N 10-123 aa
PF00156
Pribosyltran 214-261 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763778.1 |
Pfam | PF13793 |
Pribosyltran_N | Domain | 10 | 123 | 2.1e-06 | 28.3 | N-terminal domain of ribose phosphate pyrophosphokinase |
XP_057763778.1 |
Pfam | PF00156 |
Pribosyltran | Domain | 214 | 258 | 6.5e-08 | 32.8 | Phosphoribosyl transferase domain |
XP_057763779.1 |
Pfam | PF13793 |
Pribosyltran_N | Domain | 10 | 123 | 1.6e-06 | 28.7 | N-terminal domain of ribose phosphate pyrophosphokinase |
XP_057763779.1 |
Pfam | PF00156 |
Pribosyltran | Domain | 214 | 263 | 3.1e-08 | 33.8 | Phosphoribosyl transferase domain |
XP_057763780.1 |
Pfam | PF13793 |
Pribosyltran_N | Domain | 10 | 123 | 1.7e-06 | 28.6 | N-terminal domain of ribose phosphate pyrophosphokinase |
XP_057763780.1 |
Pfam | PF00156 |
Pribosyltran | Domain | 214 | 261 | 3.5e-08 | 33.6 | Phosphoribosyl transferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。