Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000329`

染色体: Chr05 坐标: 2447409-2458252 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000329`
名称	SmilChr05G000329
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2447409 - 2458252 / `-`

ID 对照

NCBI Gene ID	`LOC130985046`
GeneID	`130985046`
locus_tag	`-`
NCBI Name	`LOC130985046`
原始查询	`SmilChr05G000329`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G48620` (AT5G48620) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=26.4; qcov=1.02; evalue=2.43e-62; confidence=low
Rice	`Os11g0633500` - identity=35; qcov=0.503; evalue=6.54e-63; confidence=medium
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP)
InterPro	-
eggNOG	-
NR	GeneID:130985046

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057763788.1`
2	Cytosol	细胞质基质	0.60000	`XP_057763791.1`
3	Cytoplasm	细胞质	0.20000	`XP_057763788.1`
4	Nucleus	细胞核	0.00000	`XP_057763791.1`
5	Chromosome	染色体	0.00000	`XP_057763791.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2448184`	`T`	`TAA`	2bp_insertion	frameshift_variant	10	A23,B125,B45,B65,B71,C21,C30,C54,C56,C57
`Chr5:2448189`	`TA`	`T`	1bp_deletion	frameshift_variant	5	A10,B61,C12,C80,D8
`Chr5:2448189`	`TA`	`T`	1bp_deletion	CDS_variant	5	A10,B61,C12,C80,D8
`Chr5:2448192`	`CA`	`C`	1bp_deletion	frameshift_variant	5	B134,B52,C15,C32,C38
`Chr5:2448192`	`CA`	`C`	1bp_deletion	CDS_variant	5	B134,B52,C15,C32,C38
`Chr5:2448203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B64,C74
`Chr5:2448228`	`CT`	`C`	1bp_deletion	frameshift_variant	7	B111,B114,B123,B39,B68,B76,B98
`Chr5:2448245`	`C`	`T`	EMS_canonical_SNV	stop_gained	15	A24,A6,B101,B115,B130,B134,B20,B28,B30,B40,B66,B84,B97,C38,C65
`Chr5:2448298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr5:2448300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr5:2448321`	`C`	`CCG`	2bp_insertion	frameshift_variant	27	A2,A7,B114,B140,B17,B26,B3,B35,B39,B42,B43,B46,B56,B58,B65,B76,B90,B94,C17,C2,C23,C29,C3,C65,C76,C8,D4
`Chr5:2448327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B22,B27,B34,B45,B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763788.1

849 aa

424

849

NB-ARC

AAA_22

WHD_DRP

PF00931 NB-ARC 154-317 aa PF13401 AAA_22 167-257 aa PF23559 WHD_DRP 402-471 aa

XP_057763789.1

849 aa

424

849

NB-ARC

AAA_22

WHD_DRP

PF00931 NB-ARC 154-317 aa PF13401 AAA_22 167-257 aa PF23559 WHD_DRP 402-471 aa

XP_057763790.1

849 aa

424

849

NB-ARC

AAA_22

WHD_DRP

PF00931 NB-ARC 154-317 aa PF13401 AAA_22 167-257 aa PF23559 WHD_DRP 402-471 aa

XP_057763791.1

712 aa

356

712

NB-ARC

WHD_DRP

PF00931 NB-ARC 10-172 aa PF23559 WHD_DRP 257-330 aa

XP_057763792.1

710 aa

355

710

NB-ARC

WHD_DRP

PF00931 NB-ARC 10-172 aa PF23559 WHD_DRP 257-330 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763788.1`	Pfam	`PF00931`	NB-ARC	Domain	154	317	8.6e-42	143.4	NB-ARC domain
`XP_057763788.1`	Pfam	`PF13401`	AAA_22	Domain	167	257	4.4e-07	31.0	AAA domain
`XP_057763788.1`	Pfam	`PF23559`	WHD_DRP	Domain	402	471	2e-18	66.9	Disease resistance protein Winged helix domain
`XP_057763789.1`	Pfam	`PF00931`	NB-ARC	Domain	154	317	8.6e-42	143.4	NB-ARC domain
`XP_057763789.1`	Pfam	`PF13401`	AAA_22	Domain	167	257	4.4e-07	31.0	AAA domain
`XP_057763789.1`	Pfam	`PF23559`	WHD_DRP	Domain	402	471	2e-18	66.9	Disease resistance protein Winged helix domain
`XP_057763790.1`	Pfam	`PF00931`	NB-ARC	Domain	154	317	8.6e-42	143.4	NB-ARC domain
`XP_057763790.1`	Pfam	`PF13401`	AAA_22	Domain	167	257	4.4e-07	31.0	AAA domain
`XP_057763790.1`	Pfam	`PF23559`	WHD_DRP	Domain	402	471	2e-18	66.9	Disease resistance protein Winged helix domain
`XP_057763791.1`	Pfam	`PF00931`	NB-ARC	Domain	10	172	1.3e-40	139.5	NB-ARC domain
`XP_057763791.1`	Pfam	`PF23559`	WHD_DRP	Domain	257	330	9.3e-19	68.0	Disease resistance protein Winged helix domain
`XP_057763792.1`	Pfam	`PF00931`	NB-ARC	Domain	10	172	1.3e-40	139.5	NB-ARC domain
`XP_057763792.1`	Pfam	`PF23559`	WHD_DRP	Domain	257	330	9.2e-19	68.0	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057907808.1
AGGTATATATTGAATACAAGAATAAAGAATCTCTTCTTCTTCGTTCACACACTCCTCTCATATTCTGCTTTCCTCTGCAACTCCTAAAACAACCATGGCAGCTGCTTATGCAACTCTTGTTTCTGCTATGAATATCATAAACAGCCTTCACCATCATCCCCACCCTCCTATTTCTCTCCCCATTCAACAAGTTGAGTCTCTCACTCAAAAGATTCATTTCCTGCTCGAATTTCTCGAGGGGTATAACCCCCATCGTGATT...

XM_057907807.1
ATACAAGAATAAAGAATCTCTTCTTCTTCGTTCACACACTCCTCTCATATTCTGCTTTCCTCTGCAACTCCCAAAACAACCATGGCAGCTGCTTATGCAACTCTAGTTTCTGCTATGAATATCATAAACAGCCTTCACCATCATCCCCGCCCTCCTATTTCTCTTCACATTCAACAAGTTGAGTCTCTCACTCAAAAGATTCATTTCCTGCTCGAATTTCTCGAGGGGTATAACCCCCATCGTGGCTACTCCAACGAAGC...

CDS

5 records

下载 CDS FASTA

LOC130985046
ATGGTGGGTGCTGATGATGTCAAGCTTCAGATGATAGATAAGCTCACTTCTCATTGCCGCGATCTACAAATCATTCCCATTGTAGGGATGGGCGGCTCTGGTAAGACCACTCTTGCTAGAACTATTTATGGGCTACCATCTCTCAAGAAGCATTTTTATATTTGTGCTTGGGCTACTATCTCTCAAGAATATACCATTAGAGAAATTTTTGCATCTGTTCTTCGTCAGTTAAATATAGAAGTTGATGACAATTTGAGGGA...

Protein

5 records

下载 Protein FASTA

XP_057763788.1
MAAAYATLVSAMNIINSLHHHPRPPISLHIQQVESLTQKIHFLLEFLEGYNPHRGYSNEADPLESRIADAAYAAEYVIESHIFDQFSNNGESMSYDDLYEALEKVIQDMASIEEEAKLIQGRVGLQHQLPPDSSRSSFIPQQSMMVGADDVKCQMMDKLTSHCHDLQIIPIVGMGGSGKTTLARTIYRLPSLKKHFHICAWATISQEYTIREIFASVLRQLNIEVDDNLREHELGKKLYQHLFHRRFLIIMDDMWSIDAW...

XP_057763789.1
MAAAYATLVSAMNIINSLHHHPRPPISLHIQQVESLTQKIHFLLEFLEGYNPHRGYSNEADPLESRIADAAYAAEYVIESHIFDQFSNNGESMSYDDLYEALEKVIQDMASIEEEAKLIQGRVGLQHQLPPDSSRSSFIPQQSMMVGADDVKCQMMDKLTSHCHDLQIIPIVGMGGSGKTTLARTIYRLPSLKKHFHICAWATISQEYTIREIFASVLRQLNIEVDDNLREHELGKKLYQHLFHRRFLIIMDDMWSIDAW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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