当前解析结果
SmilChr05G000342| 统一新 Gene ID | SmilChr05G000342 |
|---|---|
| 名称 | SmilChr05G000342 |
| 描述 | GDSL esterase/lipase At4g10955-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2548633 - 2550683 / - |
| NCBI Gene ID | LOC130985060 |
|---|---|
| GeneID | 130985060 |
| locus_tag | - |
| NCBI Name | LOC130985060 |
| 原始查询 | SmilChr05G000342 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GDSL esterase/lipase At4g10955-like |
| 产物 | GDSL esterase/lipase At4g10955-like |
| Arabidopsis | AT5G50890 (AT5G50890)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835161] identity=66.8; qcov=0.908; evalue=1.72e-179; confidence=high |
| Rice | Os01g0751600 (THIS1)- identity=61.5; qcov=0.901; evalue=2.83e-162; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985060 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057763811.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057763811.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057763811.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057763811.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057763811.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2548819 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr5:2548819 |
AC |
A |
1bp_deletion | CDS_variant | 1 | D10 |
Chr5:2548824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:2548839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C70,D7 |
Chr5:2548864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr5:2548884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr5:2548996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C70,D7 |
Chr5:2549010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr5:2549022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B66,C46 |
Chr5:2549030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B13 |
Chr5:2549034 |
G |
GTT |
2bp_insertion | frameshift_variant | 6 | B2,B68,C78,C85,D2,D5 |
Chr5:2549186 |
C |
CTG |
2bp_insertion | frameshift_variant | 129 | A10,A11,A13,A14,A15,A2,A20,A21,A25,A3,A4,A7,A9,B1,B100,B104,B105,B109,B11,B110,B111,B112,B113,B118,B120,B121,B125,B127,B128,B129,B132,B133,B134,B136,B137,B138,B14,B15,B18,B19,B2,B22,B23,B24,B28,B31,B32,B35,B36,B38,B39,B40,B46,B47,B48,B49,B51,B52,B56,B57,B59,B60,B61,B62,B63,B66,B67,B73,B76,B81,B83,B86,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C17,C18,C19,C2,C22,C23,C25,C27,C28,C29,C30,C34,C37,C38,C39,C43,C44,C45,C46,C48,C5,C51,C52,C55,C56,C57,C59,C60,C7,C70,C75,C77,C79,C80,C81,C84,C86,C87,C9,D11,D3,D6,D7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。