当前解析结果
SmilChr05G000344| 统一新 Gene ID | SmilChr05G000344 |
|---|---|
| 名称 | SmilChr05G000344 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2554007 - 2557227 / - |
| NCBI Gene ID | LOC130985063 |
|---|---|
| GeneID | 130985063 |
| locus_tag | - |
| NCBI Name | LOC130985063 |
| 原始查询 | SmilChr05G000344 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.5; qcov=1.01; evalue=2.74e-75; confidence=low |
| Rice | Os11g0633500- identity=31.8; qcov=0.617; evalue=8.96e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985063 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057763814.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057763814.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057763814.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057763814.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057763814.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2554664 |
AGT |
A |
2bp_deletion | frameshift_variant | 25 | A22,B105,B106,B13,B130,B131,B132,B133,B23,B24,B27,B32,B56,B63,B64,C1,C36,C41,C53,C63,C66,C76,C85,D1,D7 |
Chr5:2554698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,B64,B78 |
Chr5:2554701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:2554705 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B67 |
Chr5:2554705 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B67 |
Chr5:2554720 |
TTA |
T |
2bp_deletion | frameshift_variant | 15 | A21,B1,B108,B124,B19,B20,B3,B31,B35,B44,B51,B55,B82,C48,D6 |
Chr5:2554723 |
T |
TG |
1bp_insertion | frameshift_variant | 3 | C29,C32,C68 |
Chr5:2554723 |
T |
TG |
1bp_insertion | CDS_variant | 3 | C29,C32,C68 |
Chr5:2554727 |
CA |
C |
1bp_deletion | frameshift_variant | 6 | A13,B131,B64,B83,C53,C73 |
Chr5:2554742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A2,B24,D7 |
Chr5:2554748 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B12,B13 |
Chr5:2554748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B13 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763814.1PF00931
NB-ARC 160-323 aa
PF13401
AAA_22 172-259 aa
PF23559
WHD_DRP 406-477 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763814.1 |
Pfam | PF00931 |
NB-ARC | Domain | 160 | 323 | 2.3e-43 | 148.5 | NB-ARC domain |
XP_057763814.1 |
Pfam | PF13401 |
AAA_22 | Domain | 172 | 259 | 4.3e-08 | 34.3 | AAA domain |
XP_057763814.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 406 | 477 | 4.4e-20 | 72.2 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。