当前解析结果
SmilChr05G000347| 统一新 Gene ID | SmilChr05G000347 |
|---|---|
| 名称 | SmilChr05G000347 |
| 描述 | heavy metal-associated isoprenylated plant protein 46-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2603840 - 2604828 / - |
| NCBI Gene ID | LOC130985067 |
|---|---|
| GeneID | 130985067 |
| locus_tag | - |
| NCBI Name | LOC130985067 |
| 原始查询 | SmilChr05G000347 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 46-like |
| 产物 | heavy metal-associated isoprenylated plant protein 46-like |
| Arabidopsis | AT3G07600 (AT3G07600)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819951] identity=41.1; qcov=0.603; evalue=3.57e-15; confidence=low |
| Rice | Os04g0469000- identity=43.4; qcov=1.01; evalue=1.23e-17; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985067 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057763824.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057763824.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057763824.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057763824.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057763824.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2604197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B51,B88,C38 |
Chr5:2604258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B4,C32,C68 |
Chr5:2604331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr5:2604370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr5:2604438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,B29,B71,C47,C71 |
Chr5:2604442 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | D5 |
Chr5:2604442 |
CG |
C |
1bp_deletion | CDS_variant | 1 | D5 |
Chr5:2604522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。