Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000394`

染色体: Chr05 坐标: 2967746-2970156 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000394`
名称	SmilChr05G000394
描述	nuclear transcription factor Y subunit A-7-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	2967746 - 2970156 / `+`

ID 对照

NCBI Gene ID	`LOC130985112`
GeneID	`130985112`
locus_tag	`-`
NCBI Name	`LOC130985112`
原始查询	`SmilChr05G000394`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear transcription factor Y subunit A-7-like
产物	nuclear transcription factor Y subunit A-7-like
Arabidopsis	`AT1G30500` (NF-YA7) nuclear factor Y, subunit A7 [Source:NCBI gene (formerly Entrezgene);Acc:839929] identity=56.1; qcov=1; evalue=1.6e-65; confidence=high
Rice	`Os12g0613000` (OsHAP2B) - identity=50.8; qcov=0.946; evalue=1.98e-53; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016602 (CCAAT-binding factor complex)
KEGG	-
Pfam	PF02045 (CBFB_NFYA)
InterPro	-
eggNOG	-
NR	GeneID:130985112

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763872.1`
2	Nucleoplasm	核质	1.00000	`XP_057763874.1`
3	Cytoplasm	细胞质	0.60000	`XP_057763872.1`
4	Cytosol	细胞质基质	0.20000	`XP_057763872.1`
5	Chromosome	染色体	0.00000	`XP_057763874.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:2968347`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr5:2968809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:2969367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr5:2969521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B31,B35,B50
`Chr5:2969872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763872.1

215 aa

108

215

CBFB_NFYA

PF02045 CBFB_NFYA 98-194 aa

XP_057763873.1

213 aa

106

213

CBFB_NFYA

PF02045 CBFB_NFYA 96-192 aa

XP_057763874.1

204 aa

102

204

CBFB_NFYA

PF02045 CBFB_NFYA 87-183 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763872.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	98	194	2e-33	116.0	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057763873.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	96	192	3.9e-33	115.0	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
`XP_057763874.1`	Pfam	`PF02045`	CBFB_NFYA	Domain	87	183	2e-33	115.9	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057907889.1
TCGGATACAGACAACAGTTTCTATCTGCATTCAACTGCAGAGAATAAGATCTCCAGCAATATATAGCGGTAGAGAGAGAAAGTAAAAGGAGGGGAGAGAGAGAAAGGAGAGAATTATTGGTCGTGTGGCAACTTCCGTGAAATCGAGTTCCCTCTCACTCAGGTAAAAAATTCGTAATCTCAAACCCTAAACATCACTTCCCCAATCTTACCGAATCTAAAATCTCTTTCGTTTCAATTTTGCTGTTTAATTTTCTCTCT...

XM_057907891.1
GGATACAGACAACAGTTTCTATCTGCATTCAACTGCAGAGAATAAGATCTCCAGCAATATATAGCGGTAGAGAGAGAAAGTAAAAGGAGGGGAGAGAGAGAAAGGAGAGAATTATTGGTCGTGTGGCAACTTCCGTGAAATCGAGTTCCCTCTCACTCAGGTCTGCGTGCCTCATTCAGCATTATGACATCTTCCGTTCACAGCCTTTCAGATAATAGTGAGGCTGATGAACAACAAAAGCACACAGAGTCATATCTACA...

CDS

3 records

下载 CDS FASTA

LOC130985112
ATGAGTGCTTGTCTGCGTGCCTCATTCAGCATTATGACATCTTCCGTTCACAGCCTTTCAGATAATAGTGAGGCTGATGAACAACAAAAGCACACAGAGTCATATCTACAGCCGTCGTCTCCTGCAAAAGGGATGTGTCACACTGGTATTGCATCACCAGGAATGCATTATGCATCGCCTGCTCAAGTTGGAGTTGGAAATGTAATGGCCCAAACAGCTTACCCATATCCCGACCCGTACTACAGGAGTATATTTGCTCC...

LOC130985112
ATGAGTGCTTGTCTGCGTGCCTCATTCAGCATTATGACATCTTCCGTTCACAGCCTTTCAGATAATAGTGAGGCTGATGAACAACAAAAGCACACAGAGTCATATCTACAGCCGTCGTCTCCTGCAAAAGGGATGTGTCACACTGGTATTGCATCACCAGGAATGCATTATGCATCGCCTGCTCAAGTTGGAGTTGGAAATGCCCAAACAGCTTACCCATATCCCGACCCGTACTACAGGAGTATATTTGCTCCGTACGA...

Protein

3 records

下载 Protein FASTA

XP_057763872.1
MSACLRASFSIMTSSVHSLSDNSEADEQQKHTESYLQPSSPAKGMCHTGIASPGMHYASPAQVGVGNVMAQTAYPYPDPYYRSIFAPYETQPYPAQPYPAQPMVHLQLMGIQQAGVPLPSEAVEEPVFVNAKQYHGILRRRQSRAKAESENKLSKPRKPYLHESRHLHALRRARGNGGRFQKKNDNQKKKDVESSEKYHDNINLNSEKDAPKSAS

XP_057763873.1
MSACLRASFSIMTSSVHSLSDNSEADEQQKHTESYLQPSSPAKGMCHTGIASPGMHYASPAQVGVGNAQTAYPYPDPYYRSIFAPYETQPYPAQPYPAQPMVHLQLMGIQQAGVPLPSEAVEEPVFVNAKQYHGILRRRQSRAKAESENKLSKPRKPYLHESRHLHALRRARGNGGRFQKKNDNQKKKDVESSEKYHDNINLNSEKDAPKSAS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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