Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000401

染色体: Chr05 坐标: 3021038-3034413 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000401
名称SmilChr05G000401
描述187-kDa microtubule-associated protein AIR9
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向3021038 - 3034413 / +

ID 对照

NCBI Gene IDLOC130985119
GeneID130985119
locus_tag-
NCBI NameLOC130985119
原始查询SmilChr05G000401

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述187-kDa microtubule-associated protein AIR9
产物187-kDa microtubule-associated protein AIR9
ArabidopsisAT2G34680 (AIR9)
Outer arm dynein light chain 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:818033]
identity=66.3; qcov=0.978; evalue=0; confidence=high
RiceOs07g0148800
-
identity=74.9; qcov=0.218; evalue=0; confidence=weak
GOGO:0005515 (protein binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma)
KEGG-
PfamPF12799 (LRR_4); PF23197 (IG_AIR9); PF23218 (PH_AIR9)
InterPro-
eggNOG-
NRGeneID:130985119

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057763887.1
2 Cytosol 细胞质基质 0.80000 XP_057763887.1
3 Cytoskeleton 细胞骨架 0.60000 XP_057763887.1
4 Spindle pole Spindle pole 0.20000 XP_057763887.1
5 Nucleus 细胞核 0.00000 XP_057763887.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:3022504 G A EMS_canonical_SNV CDS_variant 2 B30,B88
Chr5:3022540 C T EMS_canonical_SNV CDS_variant 1 B129
Chr5:3022629 G A EMS_canonical_SNV CDS_variant 4 A2,B31,B35,B50
Chr5:3022685 G A EMS_canonical_SNV CDS_variant 1 D10
Chr5:3022765 G A EMS_canonical_SNV CDS_variant 1 C72
Chr5:3022800 C T EMS_canonical_SNV CDS_variant 1 C51
Chr5:3022840 G A EMS_canonical_SNV CDS_variant 2 B75,C16
Chr5:3023027 C T EMS_canonical_SNV CDS_variant 4 B80,C19,C21,C70
Chr5:3023033 G A EMS_canonical_SNV CDS_variant 2 C27,C77
Chr5:3023037 C T EMS_canonical_SNV CDS_variant 2 C46,D8
Chr5:3023235 C T EMS_canonical_SNV CDS_variant 3 B13,B31,C55
Chr5:3023273 G A EMS_canonical_SNV CDS_variant 2 B37,B39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763887.1
1723 aa
N
1
862
1723
LRR_4
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
PH_AIR9
C
PF12799 LRR_4 354-391 aa PF23197 IG_AIR9 512-599 aa PF23197 IG_AIR9 611-697 aa PF23197 IG_AIR9 707-793 aa PF23197 IG_AIR9 802-894 aa PF23197 IG_AIR9 905-990 aa PF23197 IG_AIR9 1005-1083 aa PF23197 IG_AIR9 1099-1181 aa PF23197 IG_AIR9 1196-1285 aa PF23197 IG_AIR9 1308-1377 aa PF23197 IG_AIR9 1499-1584 aa PF23218 PH_AIR9 1614-1710 aa
XP_057763888.1
1723 aa
N
1
862
1723
LRR_4
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
PH_AIR9
C
PF12799 LRR_4 354-391 aa PF23197 IG_AIR9 512-599 aa PF23197 IG_AIR9 611-697 aa PF23197 IG_AIR9 707-793 aa PF23197 IG_AIR9 802-894 aa PF23197 IG_AIR9 905-990 aa PF23197 IG_AIR9 1005-1083 aa PF23197 IG_AIR9 1099-1181 aa PF23197 IG_AIR9 1196-1285 aa PF23197 IG_AIR9 1308-1377 aa PF23197 IG_AIR9 1499-1584 aa PF23218 PH_AIR9 1614-1710 aa
XP_057763889.1
1723 aa
N
1
862
1723
LRR_4
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
PH_AIR9
C
PF12799 LRR_4 354-391 aa PF23197 IG_AIR9 512-599 aa PF23197 IG_AIR9 611-697 aa PF23197 IG_AIR9 707-793 aa PF23197 IG_AIR9 802-894 aa PF23197 IG_AIR9 905-990 aa PF23197 IG_AIR9 1005-1083 aa PF23197 IG_AIR9 1099-1181 aa PF23197 IG_AIR9 1196-1285 aa PF23197 IG_AIR9 1308-1377 aa PF23197 IG_AIR9 1499-1584 aa PF23218 PH_AIR9 1614-1710 aa
XP_057763890.1
1723 aa
N
1
862
1723
LRR_4
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
PH_AIR9
C
PF12799 LRR_4 354-391 aa PF23197 IG_AIR9 512-599 aa PF23197 IG_AIR9 611-697 aa PF23197 IG_AIR9 707-793 aa PF23197 IG_AIR9 802-894 aa PF23197 IG_AIR9 905-990 aa PF23197 IG_AIR9 1005-1083 aa PF23197 IG_AIR9 1099-1181 aa PF23197 IG_AIR9 1196-1285 aa PF23197 IG_AIR9 1308-1377 aa PF23197 IG_AIR9 1499-1584 aa PF23218 PH_AIR9 1614-1710 aa
XP_057763891.1
1723 aa
N
1
862
1723
LRR_4
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
PH_AIR9
C
PF12799 LRR_4 354-391 aa PF23197 IG_AIR9 512-599 aa PF23197 IG_AIR9 611-697 aa PF23197 IG_AIR9 707-793 aa PF23197 IG_AIR9 802-894 aa PF23197 IG_AIR9 905-990 aa PF23197 IG_AIR9 1005-1083 aa PF23197 IG_AIR9 1099-1181 aa PF23197 IG_AIR9 1196-1285 aa PF23197 IG_AIR9 1308-1377 aa PF23197 IG_AIR9 1499-1584 aa PF23218 PH_AIR9 1614-1710 aa
XP_057763892.1
1723 aa
N
1
862
1723
LRR_4
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
IG_AIR9
PH_AIR9
C
PF12799 LRR_4 354-391 aa PF23197 IG_AIR9 512-599 aa PF23197 IG_AIR9 611-697 aa PF23197 IG_AIR9 707-793 aa PF23197 IG_AIR9 802-894 aa PF23197 IG_AIR9 905-990 aa PF23197 IG_AIR9 1005-1083 aa PF23197 IG_AIR9 1099-1181 aa PF23197 IG_AIR9 1196-1285 aa PF23197 IG_AIR9 1308-1377 aa PF23197 IG_AIR9 1499-1584 aa PF23218 PH_AIR9 1614-1710 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057763887.1 Pfam PF12799 LRR_4 Repeat 354 391 1.1e-19 70.7 Leucine Rich repeats (2 copies)
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 512 599 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 611 697 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 707 793 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 802 894 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 905 990 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 1005 1083 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 1099 1181 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 1196 1285 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 1308 1377 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23197 IG_AIR9 Domain 1499 1584 2.2e-213 691.5 AIR9 A9 domain
XP_057763887.1 Pfam PF23218 PH_AIR9 Domain 1614 1710 3.3e-54 182.1 AIR9 PH-like domain
XP_057763888.1 Pfam PF12799 LRR_4 Repeat 354 391 1.1e-19 70.7 Leucine Rich repeats (2 copies)
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 512 599 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 611 697 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 707 793 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 802 894 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 905 990 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 1005 1083 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 1099 1181 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 1196 1285 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 1308 1377 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23197 IG_AIR9 Domain 1499 1584 2.2e-213 691.5 AIR9 A9 domain
XP_057763888.1 Pfam PF23218 PH_AIR9 Domain 1614 1710 3.3e-54 182.1 AIR9 PH-like domain
XP_057763889.1 Pfam PF12799 LRR_4 Repeat 354 391 1.1e-19 70.7 Leucine Rich repeats (2 copies)
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 512 599 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 611 697 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 707 793 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 802 894 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 905 990 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 1005 1083 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 1099 1181 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 1196 1285 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 1308 1377 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23197 IG_AIR9 Domain 1499 1584 2.2e-213 691.5 AIR9 A9 domain
XP_057763889.1 Pfam PF23218 PH_AIR9 Domain 1614 1710 3.3e-54 182.1 AIR9 PH-like domain
XP_057763890.1 Pfam PF12799 LRR_4 Repeat 354 391 1.1e-19 70.7 Leucine Rich repeats (2 copies)
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 512 599 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 611 697 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 707 793 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 802 894 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 905 990 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 1005 1083 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 1099 1181 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 1196 1285 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 1308 1377 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23197 IG_AIR9 Domain 1499 1584 2.2e-213 691.5 AIR9 A9 domain
XP_057763890.1 Pfam PF23218 PH_AIR9 Domain 1614 1710 3.3e-54 182.1 AIR9 PH-like domain
XP_057763891.1 Pfam PF12799 LRR_4 Repeat 354 391 1.1e-19 70.7 Leucine Rich repeats (2 copies)
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 512 599 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 611 697 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 707 793 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 802 894 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 905 990 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 1005 1083 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 1099 1181 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 1196 1285 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 1308 1377 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23197 IG_AIR9 Domain 1499 1584 2.2e-213 691.5 AIR9 A9 domain
XP_057763891.1 Pfam PF23218 PH_AIR9 Domain 1614 1710 3.3e-54 182.1 AIR9 PH-like domain
XP_057763892.1 Pfam PF12799 LRR_4 Repeat 354 391 1.1e-19 70.7 Leucine Rich repeats (2 copies)
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 512 599 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 611 697 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 707 793 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 802 894 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 905 990 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 1005 1083 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 1099 1181 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 1196 1285 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 1308 1377 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23197 IG_AIR9 Domain 1499 1584 2.2e-213 691.5 AIR9 A9 domain
XP_057763892.1 Pfam PF23218 PH_AIR9 Domain 1614 1710 3.3e-54 182.1 AIR9 PH-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057907909.1
GCACCGCAATGGGTAGTTATGCTTTGAGACAAAAAAAATCATAGCATATGCTCTGTAACCCACATCACCTTTGGCCCCAATACCCCATTAACAAATATATCTACCTCTCTCTCTCTCTCTCTGCTTCACTCTAACAGCTCTCTCTCTCTCTCTTTCTTAATTAAACTTCTACTACACAGTCTCTTTCTCTTTCCTACTTTTTTTTTCCTCGGCACGCTTTGAAAAAGATAAAAAGTGTAGTATGGGAGGCCAAATTTGAT...
XM_057907906.1
CATTAACAAATATATCTACCTCTCTCTCTCTCTCTCTGCTTCACTCTAACAGCTCTCTCTCTCTCTCTTTCTTAATTAAACTTCTACTACACAGTCTCTTTCTCTTTCCTACTTTTTTTTTCCTCGGCACGCTTTGAAAAAGATAAAAAGTGTAGTATGGGAGGCCAAATTTGATAATACTGATATTGGAATGGTGGATTAATTATGGCTCTGCAAGGGACAACTTTTCAGGCATAAGCTAGGGTAGTTTCTCCCGATGG...

CDS

6 records

下载 CDS FASTA
LOC130985119
ATGGAGGCATCAATTGTCCAATCACCTGAGGTTCCAGTAGAGCTAGAGGCTGAACATTCAGTCCCTGAGCTGCAAGCCCCGATGCTGCAGGAAGAACCTTGCTCAGAGAGTGTGAAGAAAGGCTCTAAGGTGCCAAAGCCCAATGGCGCTGCTCCAAATAGAGGCACTGATAGAAAAACAAAGAGTGGTATTGACTCGAGTGTTAATCAGACAAGATCGTCACTGGCTAGACCAACTTTGAGTAGCACGTCACGCACTTC...
LOC130985119
ATGGAGGCATCAATTGTCCAATCACCTGAGGTTCCAGTAGAGCTAGAGGCTGAACATTCAGTCCCTGAGCTGCAAGCCCCGATGCTGCAGGAAGAACCTTGCTCAGAGAGTGTGAAGAAAGGCTCTAAGGTGCCAAAGCCCAATGGCGCTGCTCCAAATAGAGGCACTGATAGAAAAACAAAGAGTGGTATTGACTCGAGTGTTAATCAGACAAGATCGTCACTGGCTAGACCAACTTTGAGTAGCACGTCACGCACTTC...

Protein

6 records

下载 Protein FASTA
XP_057763887.1
MEASIVQSPEVPVELEAEHSVPELQAPMLQEEPCSESVKKGSKVPKPNGAAPNRGTDRKTKSGIDSSVNQTRSSLARPTLSSTSRTSGSVPVARRSSTGGLPEKQPMVITKRQSADNGLAGGKRSSSLASEPLRKSLPELRRSTASSIGAKPAIRQSISETRNSVPISPAARSPRTPASSESSKHDSMKKNSLRSSQFSVSSIKKVSSPSLDSSGSGSTIRKSVAKVSPHSARSPTVSSGSKSGSLSTSLDRSSSFSGRK...
XP_057763888.1
MEASIVQSPEVPVELEAEHSVPELQAPMLQEEPCSESVKKGSKVPKPNGAAPNRGTDRKTKSGIDSSVNQTRSSLARPTLSSTSRTSGSVPVARRSSTGGLPEKQPMVITKRQSADNGLAGGKRSSSLASEPLRKSLPELRRSTASSIGAKPAIRQSISETRNSVPISPAARSPRTPASSESSKHDSMKKNSLRSSQFSVSSIKKVSSPSLDSSGSGSTIRKSVAKVSPHSARSPTVSSGSKSGSLSTSLDRSSSFSGRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器