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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000430

染色体: Chr05 坐标: 3226237-3230665 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000430
名称SmilChr05G000430
描述pentatricopeptide repeat-containing protein At4g01570
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向3226237 - 3230665 / +

ID 对照

NCBI Gene IDLOC130985148
GeneID130985148
locus_tag-
NCBI NameLOC130985148
原始查询SmilChr05G000430

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At4g01570
产物pentatricopeptide repeat-containing protein At4g01570
ArabidopsisAT4G01570 (AT4G01570)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828133]
identity=55.9; qcov=1.01; evalue=0; confidence=high
RiceOs03g0712900
-
identity=49.9; qcov=0.426; evalue=1.77e-121; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130985148

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057763936.1
2 Chloroplast 叶绿体 0.20000 XP_057763936.1
3 Nucleus 细胞核 0.00000 XP_057763936.1
4 Chromosome 染色体 0.00000 XP_057763936.1
5 Centromere 着丝粒 0.00000 XP_057763936.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:3228070 C T EMS_canonical_SNV CDS_variant 1 C59
Chr5:3228085 G A EMS_canonical_SNV CDS_variant 1 C59
Chr5:3228097 C T EMS_canonical_SNV CDS_variant 1 B51
Chr5:3228126 C T EMS_canonical_SNV CDS_variant 5 B3,B99,C31,C76,C87
Chr5:3228138 G A EMS_canonical_SNV CDS_variant 5 B104,B137,B35,B50,D10
Chr5:3228149 G A EMS_canonical_SNV CDS_variant 1 C59
Chr5:3228191 G A EMS_canonical_SNV CDS_variant 3 B137,B35,B50
Chr5:3228269 G A EMS_canonical_SNV CDS_variant 2 C11,C69
Chr5:3228273 C T EMS_canonical_SNV CDS_variant 2 B130,B14
Chr5:3228312 G A EMS_canonical_SNV CDS_variant 1 C20
Chr5:3228370 G A EMS_canonical_SNV CDS_variant 3 A18,B1,B122
Chr5:3228451 C T EMS_canonical_SNV CDS_variant 3 A1,B31,B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763936.1
828 aa
N
1
414
828
PPR_3
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_2
PPR
PPR
PPR
PPR_3
TPR_24
PPR_long
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13812 PPR_3 136-178 aa PF13812 PPR_3 265-313 aa PF01535 PPR 270-297 aa PF13812 PPR_3 289-350 aa PF12854 PPR_1 301-329 aa PF13041 PPR_2 302-352 aa PF01535 PPR 306-332 aa PF12854 PPR_1 335-367 aa PF01535 PPR 341-371 aa PF13812 PPR_3 361-418 aa PF13041 PPR_2 374-423 aa PF01535 PPR 376-404 aa PF01535 PPR 413-441 aa PF01535 PPR 448-478 aa PF13812 PPR_3 619-668 aa PF23276 TPR_24 630-701 aa PF17177 PPR_long 639-791 aa PF13041 PPR_2 655-703 aa PF01535 PPR 657-683 aa PF01535 PPR 693-721 aa PF23276 TPR_24 702-760 aa PF13812 PPR_3 713-771 aa PF12854 PPR_1 724-753 aa PF13041 PPR_2 725-768 aa PF01535 PPR 727-757 aa PF13812 PPR_3 748-798 aa PF12854 PPR_1 756-787 aa PF13041 PPR_2 759-802 aa PF01535 PPR 762-792 aa
XP_057763937.1
828 aa
N
1
414
828
PPR_3
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_3
PPR_2
PPR
PPR
PPR
PPR_3
TPR_24
PPR_long
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13812 PPR_3 136-178 aa PF13812 PPR_3 265-313 aa PF01535 PPR 270-297 aa PF13812 PPR_3 289-350 aa PF12854 PPR_1 301-329 aa PF13041 PPR_2 302-352 aa PF01535 PPR 306-332 aa PF12854 PPR_1 335-367 aa PF01535 PPR 341-371 aa PF13812 PPR_3 361-418 aa PF13041 PPR_2 374-423 aa PF01535 PPR 376-404 aa PF01535 PPR 413-441 aa PF01535 PPR 448-478 aa PF13812 PPR_3 619-668 aa PF23276 TPR_24 630-701 aa PF17177 PPR_long 639-791 aa PF13041 PPR_2 655-703 aa PF01535 PPR 657-683 aa PF01535 PPR 693-721 aa PF23276 TPR_24 702-760 aa PF13812 PPR_3 713-771 aa PF12854 PPR_1 724-753 aa PF13041 PPR_2 725-768 aa PF01535 PPR 727-757 aa PF13812 PPR_3 748-798 aa PF12854 PPR_1 756-787 aa PF13041 PPR_2 759-802 aa PF01535 PPR 762-792 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057763936.1 Pfam PF13812 PPR_3 Repeat 136 178 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763936.1 Pfam PF13812 PPR_3 Repeat 265 313 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763936.1 Pfam PF01535 PPR Repeat 270 297 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF13812 PPR_3 Repeat 289 350 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763936.1 Pfam PF12854 PPR_1 Repeat 301 329 9.3e-80 262.7 PPR repeat
XP_057763936.1 Pfam PF13041 PPR_2 Repeat 302 352 1.3e-95 314.0 PPR repeat family
XP_057763936.1 Pfam PF01535 PPR Repeat 306 332 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF12854 PPR_1 Repeat 335 367 9.3e-80 262.7 PPR repeat
XP_057763936.1 Pfam PF01535 PPR Repeat 341 371 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF13812 PPR_3 Repeat 361 418 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763936.1 Pfam PF13041 PPR_2 Repeat 374 423 1.3e-95 314.0 PPR repeat family
XP_057763936.1 Pfam PF01535 PPR Repeat 376 404 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF01535 PPR Repeat 413 441 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF01535 PPR Repeat 448 478 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF13812 PPR_3 Repeat 619 668 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763936.1 Pfam PF23276 TPR_24 Repeat 630 701 8.7e-36 123.5 Pentatricopeptide repeat-containing protein
XP_057763936.1 Pfam PF17177 PPR_long Repeat 639 791 1.2e-19 71.2 Pentacotripeptide-repeat region of PRORP
XP_057763936.1 Pfam PF13041 PPR_2 Repeat 655 703 1.3e-95 314.0 PPR repeat family
XP_057763936.1 Pfam PF01535 PPR Repeat 657 683 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF01535 PPR Repeat 693 721 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF23276 TPR_24 Repeat 702 760 8.7e-36 123.5 Pentatricopeptide repeat-containing protein
XP_057763936.1 Pfam PF13812 PPR_3 Repeat 713 771 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763936.1 Pfam PF12854 PPR_1 Repeat 724 753 9.3e-80 262.7 PPR repeat
XP_057763936.1 Pfam PF13041 PPR_2 Repeat 725 768 1.3e-95 314.0 PPR repeat family
XP_057763936.1 Pfam PF01535 PPR Repeat 727 757 2.4e-79 256.9 PPR repeat
XP_057763936.1 Pfam PF13812 PPR_3 Repeat 748 798 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763936.1 Pfam PF12854 PPR_1 Repeat 756 787 9.3e-80 262.7 PPR repeat
XP_057763936.1 Pfam PF13041 PPR_2 Repeat 759 802 1.3e-95 314.0 PPR repeat family
XP_057763936.1 Pfam PF01535 PPR Repeat 762 792 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF13812 PPR_3 Repeat 136 178 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763937.1 Pfam PF13812 PPR_3 Repeat 265 313 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763937.1 Pfam PF01535 PPR Repeat 270 297 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF13812 PPR_3 Repeat 289 350 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763937.1 Pfam PF12854 PPR_1 Repeat 301 329 9.3e-80 262.7 PPR repeat
XP_057763937.1 Pfam PF13041 PPR_2 Repeat 302 352 1.3e-95 314.0 PPR repeat family
XP_057763937.1 Pfam PF01535 PPR Repeat 306 332 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF12854 PPR_1 Repeat 335 367 9.3e-80 262.7 PPR repeat
XP_057763937.1 Pfam PF01535 PPR Repeat 341 371 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF13812 PPR_3 Repeat 361 418 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763937.1 Pfam PF13041 PPR_2 Repeat 374 423 1.3e-95 314.0 PPR repeat family
XP_057763937.1 Pfam PF01535 PPR Repeat 376 404 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF01535 PPR Repeat 413 441 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF01535 PPR Repeat 448 478 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF13812 PPR_3 Repeat 619 668 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763937.1 Pfam PF23276 TPR_24 Repeat 630 701 8.7e-36 123.5 Pentatricopeptide repeat-containing protein
XP_057763937.1 Pfam PF17177 PPR_long Repeat 639 791 1.2e-19 71.2 Pentacotripeptide-repeat region of PRORP
XP_057763937.1 Pfam PF13041 PPR_2 Repeat 655 703 1.3e-95 314.0 PPR repeat family
XP_057763937.1 Pfam PF01535 PPR Repeat 657 683 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF01535 PPR Repeat 693 721 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF23276 TPR_24 Repeat 702 760 8.7e-36 123.5 Pentatricopeptide repeat-containing protein
XP_057763937.1 Pfam PF13812 PPR_3 Repeat 713 771 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763937.1 Pfam PF12854 PPR_1 Repeat 724 753 9.3e-80 262.7 PPR repeat
XP_057763937.1 Pfam PF13041 PPR_2 Repeat 725 768 1.3e-95 314.0 PPR repeat family
XP_057763937.1 Pfam PF01535 PPR Repeat 727 757 2.4e-79 256.9 PPR repeat
XP_057763937.1 Pfam PF13812 PPR_3 Repeat 748 798 1.7e-49 166.4 Pentatricopeptide repeat domain
XP_057763937.1 Pfam PF12854 PPR_1 Repeat 756 787 9.3e-80 262.7 PPR repeat
XP_057763937.1 Pfam PF13041 PPR_2 Repeat 759 802 1.3e-95 314.0 PPR repeat family
XP_057763937.1 Pfam PF01535 PPR Repeat 762 792 2.4e-79 256.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057907953.1
AAGTCGCTAAAGTCTAATACTCATTTTTCTTCACTGTTTGTAGAAATACCTTTTCCTAAAATCGTGTTCGTGTGAGTCATCAGAAAAACGCAGCGCATCTCTCTCGCCGCCGCTCGGACCGCCCTACCCCGCCTGCTCCGGCAGCGGCGCTGCAAGCCTACAGCAGTCCGGCTCCGCCCAGCCTTCGCAACAGCAGCCAGCAGTGTTGATACCAGCAGCGAACTCCTCCATGAACCAACAGGCATTGCTAATCTGAAATG...
XM_057907954.1
TCATTTTTCTTCACTGTTTGTAGAAATACCTTTTCCTAAAATCGTGTTCGTGTGAGTCATCAGAAAAACGCAGCGCATCTCTCTCGCCGCCGCTCGGACCGCCCTACCCCGCCTGCTCCGGCAGCGGCGCTGCAAGCCTACAGCAGTCCGGCTCCGCCCAGCCTTCGCAACAGCAGCCAGCAGGAAAAGCAAGCTGCAGTAGCAAACAGATTACCATGGAGGCGCACATTTTTTAAAAAAAATCGGGTATTTTGGGTACC...

CDS

2 records

下载 CDS FASTA
LOC130985148
ATGCGCCATGGCGGCGTACCAAGAGCATCGACTATTTTTCACAATTCCATTGCATCACTCCTCCCCATCACCACACGATTCAGGTTCACTGCGGTGGCAGAAAAAGCTGTTAAGTCAGCAAGTGTATCTGAACTTGGCGACCTTCTAGTTGTTGCTTCCATTGCCAAAACTCTCTCAAAACCTGGCGGAATTCACGATCTAGAGAAGAATGGAGATGCCATCCCATTATCTGAAGAGCTTGTGCTTCGAGTGCTCCGCCG...
LOC130985148
ATGCGCCATGGCGGCGTACCAAGAGCATCGACTATTTTTCACAATTCCATTGCATCACTCCTCCCCATCACCACACGATTCAGGTTCACTGCGGTGGCAGAAAAAGCTGTTAAGTCAGCAAGTGTATCTGAACTTGGCGACCTTCTAGTTGTTGCTTCCATTGCCAAAACTCTCTCAAAACCTGGCGGAATTCACGATCTAGAGAAGAATGGAGATGCCATCCCATTATCTGAAGAGCTTGTGCTTCGAGTGCTCCGCCG...

Protein

2 records

下载 Protein FASTA
XP_057763936.1
MRHGGVPRASTIFHNSIASLLPITTRFRFTAVAEKAVKSASVSELGDLLVVASIAKTLSKPGGIHDLEKNGDAIPLSEELVLRVLRRGSLDSSRKLGFFHWCSHRQDYKHSACTYTQMFKVLCFLPHQHHDDVLELVASMRRDGVALDSMTLKMILDGFIRAGKYDSALEVLDYVERELIGSSCFSPDVYSPVIVALVRKDQISIALSIFLKLMDSALLAANSENVVIPDAIACNEMLVGLKKADMRDEFRQVYGNLRKT...
XP_057763937.1
MRHGGVPRASTIFHNSIASLLPITTRFRFTAVAEKAVKSASVSELGDLLVVASIAKTLSKPGGIHDLEKNGDAIPLSEELVLRVLRRGSLDSSRKLGFFHWCSHRQDYKHSACTYTQMFKVLCFLPHQHHDDVLELVASMRRDGVALDSMTLKMILDGFIRAGKYDSALEVLDYVERELIGSSCFSPDVYSPVIVALVRKDQISIALSIFLKLMDSALLAANSENVVIPDAIACNEMLVGLKKADMRDEFRQVYGNLRKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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