Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000433`

染色体: Chr05 坐标: 3260910-3262858 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000433`
名称	SmilChr05G000433
描述	tyrosine decarboxylase-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3260910 - 3262858 / `-`

ID 对照

NCBI Gene ID	`LOC130985153`
GeneID	`130985153`
locus_tag	`-`
NCBI Name	`LOC130985153`
原始查询	`SmilChr05G000433`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tyrosine decarboxylase-like
产物	tyrosine decarboxylase-like
Arabidopsis	`AT2G20340` (AAS) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816553] identity=56; qcov=0.978; evalue=0; confidence=high
Rice	`Os07g0437500` (TDC2) - identity=56.1; qcov=0.963; evalue=0; confidence=high
GO	GO:0006520 (amino acid metabolic process); GO:0016831 (carboxy-lyase activity); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00901 (Indole alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00965 (Betalain biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00282 (Pyridoxal_deC)
InterPro	-
eggNOG	-
NR	GeneID:130985153

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057763941.1`
2	Cytosol	细胞质基质	0.40000	`XP_057763941.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057763941.1`
4	Nucleus	细胞核	0.00000	`XP_057763941.1`
5	Chromosome	染色体	0.00000	`XP_057763941.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3261294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,B71
`Chr5:3261326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr5:3261351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr5:3261414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr5:3261426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,C45
`Chr5:3261453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B39,B61,C43,C79,D4
`Chr5:3261485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B57,B71,B80
`Chr5:3261534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B132,B133,B25,C36
`Chr5:3261562`	`AT`	`A`	1bp_deletion	frameshift_variant	1	A19
`Chr5:3261562`	`AT`	`A`	1bp_deletion	CDS_variant	1	A19
`Chr5:3261565`	`CCG`	`C`	2bp_deletion	frameshift_variant	1	A19
`Chr5:3261565`	`CCG`	`C`	2bp_deletion	CDS_variant	1	A19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763941.1

507 aa

254

507

Pyridoxal_deC

PF00282 Pyridoxal_deC 54-427 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763941.1`	Pfam	`PF00282`	Pyridoxal_deC	Domain	54	427	5.2e-116	388.2	Pyridoxal-dependent decarboxylase conserved domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057907958.1
ATTCATCTCTCATCAATTTCAAAACATTTTCTCCCGATTTCTAAATCGAAGATTCGAATCCAAACTCATATCCGATGAATATTCCGAACAACGATAAGCCAGAAAACGGCAACGCCGGAACAATCAAGCCACTCGACCCGGAAGAATTCCGGAGACAAGGCCATCTAGTCATCGACTTTCTCGCAGATTACTACGAGAACGTCGAGAAATACCCGGTTCGCAATCAGGTCGAACCGGGCTACCTCAAGGACCGGCTACCC...

CDS

1 records

下载 CDS FASTA

LOC130985153
ATGAATATTCCGAACAACGATAAGCCAGAAAACGGCAACGCCGGAACAATCAAGCCACTCGACCCGGAAGAATTCCGGAGACAAGGCCATCTAGTCATCGACTTTCTCGCAGATTACTACGAGAACGTCGAGAAATACCCGGTTCGCAATCAGGTCGAACCGGGCTACCTCAAGGACCGGCTACCCAGCTCGGCTCCAAACAAACCGGAGCCGATCGAAGAAATCCTCCGCGACGTTCAGAGAGATATCGTCCCCGGCTT...

Protein

1 records

下载 Protein FASTA

XP_057763941.1
MNIPNNDKPENGNAGTIKPLDPEEFRRQGHLVIDFLADYYENVEKYPVRNQVEPGYLKDRLPSSAPNKPEPIEEILRDVQRDIVPGLTHWQSPNYYAYFPSSGSIAGFLGEMLSTGFNVVGFNWMSSPAATELESIVMDWLGKMLKLPSEFLFSGGGGGVLQGTTCEAILCTMVAARDRVLKRIGRDNINKLVVYGSDQTHSAIQKAAQIAGINPSNFRAIATSKATAFGLTGEAFRAQVQSEVESGLVPLFLCATIGTT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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