Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000443`

染色体: Chr05 坐标: 3359226-3362689 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000443`
名称	SmilChr05G000443
描述	uncharacterized SmilChr05G000443
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3359226 - 3362689 / `-`

ID 对照

NCBI Gene ID	`LOC130985162`
GeneID	`130985162`
locus_tag	`-`
NCBI Name	`LOC130985162`
原始查询	`SmilChr05G000443`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:839912]; symbol=AT1G30320; hit=AT1G30320; species=arabidopsis; confidence=high
产物	Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:839912]; symbol=AT1G30320; hit=AT1G30320; species=arabidopsis; confidence=high
Arabidopsis	`AT1G30320` (AT1G30320) Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:839912] identity=51.6; qcov=1.07; evalue=1.76e-162; confidence=high
Rice	`Os04g0620200` (GSD1) - identity=40.7; qcov=1.08; evalue=3.15e-105; confidence=medium
GO	-
KEGG	-
Pfam	PF03763 (Remorin_C)
InterPro	-
eggNOG	-
NR	GeneID:130985162

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057763955.1`
2	Cytoskeleton	细胞骨架	0.40000	`XP_057763956.1`
3	Nucleus	细胞核	0.20000	`XP_057763955.1`
4	Cytosol	细胞质基质	0.20000	`XP_057763955.1`
5	Chromosome	染色体	0.00000	`XP_057763956.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3359533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C38
`Chr5:3359563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B123,B99,C75,D3
`Chr5:3359614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:3359650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr5:3359735`	`AT`	`A`	1bp_deletion	frameshift_variant	17	B115,B125,B139,B27,B49,B51,B69,B81,B95,B98,C17,C2,C42,C52,C6,C62,D8
`Chr5:3359739`	`TA`	`T`	1bp_deletion	frameshift_variant	56	A24,A25,A3,A6,A7,B111,B12,B127,B134,B136,B137,B139,B18,B2,B26,B3,B34,B35,B40,B5,B50,B54,B57,B63,B68,B71,B74,B78,B83,B88,B94,B97,C10,C12,C13,C15,C16,C17,C19,C32,C40,C42,C5,C62,C63,C68,C70,C74,C77,C81,C84,C86,C9,D10,D11,D6
`Chr5:3359745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B68
`Chr5:3359751`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	A3,A7,B111,B54,C13,C17,C19,C86,D10
`Chr5:3359797`	`T`	`TG`	1bp_insertion	frameshift_variant	3	B134,C70,D10
`Chr5:3359797`	`T`	`TG`	1bp_insertion	CDS_variant	3	B134,C70,D10
`Chr5:3359810`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B129
`Chr5:3359810`	`GC`	`G`	1bp_deletion	CDS_variant	1	B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763955.1

543 aa

272

543

Remorin_C

PF03763 Remorin_C 401-448 aa PF03763 Remorin_C 475-534 aa

XP_057763956.1

512 aa

256

512

Remorin_C

PF03763 Remorin_C 401-503 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763955.1`	Pfam	`PF03763`	Remorin_C	Family	401	448	3.3e-24	85.4	Remorin, C-terminal region
`XP_057763955.1`	Pfam	`PF03763`	Remorin_C	Family	475	534	3.3e-24	85.4	Remorin, C-terminal region
`XP_057763956.1`	Pfam	`PF03763`	Remorin_C	Family	401	503	1e-28	100.0	Remorin, C-terminal region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057907973.1
ATGTATATATATAAAAAAAAGTTTCGAAAAAAAAAAACCCAATTCGAAAATAATCGCCGACTAGATAGTCAATAAATCGGTAAAAGATCGGCAACGTTGCCACCAACTTACATACATTCTCTCTCTCTTCTCTTTCTCTCTCTTTCTCTCTTCTCACTCTCTCTAAAACAAGGCGCATCAGATTAGCAGAGCTGTGACCATAAAGAGCTTTGGCTTCTTCTTAGCTACCTCTCCTCTCTCTCTCTCTCTAGACCTCTGTT...

XM_057907972.1
AGATCGGCAACGTTGCCACCAACTTACATACATTCTCTCTCTCTTCTCTTTCTCTCTCTTTCTCTCTTCTCACTCTCTCTAAAACAAGGCGCATCAGATTAGCAGAGCTGTGACCATAAAGAGCTTTGGCTTCTTCTTAGCTACCTCTCCTCTCTCTCTCTCTCTAGACCTCTGTTCACGGTTGTGCTGTGCGTATCTGCGTGTGTGAGTAAAATAGAAAGCAAAAAAGTAGAGAGAGAATCTAATGGAGTACGAGAGGA...

CDS

2 records

下载 CDS FASTA

LOC130985162
ATGGAGTACGAGAGGATACACAAAGTTCAGACTGGTATCCTATCTCCTAGTAAGTTGAGGATAAAGCTTATGGGGCCACATCATCAAAAGAAAAAAGATGGATCAAACAGTAATTCTTCAAGAACATCTCCTTCTAAGATGGAAGATTCGGAATTTGTCAATAATAGCTTGTTGGCAGCCCAAAATGGGGATTTTGGAGAAGAAGTATCGAATTTAGAGGTTTTGCAAATTAAGTCTGATGGTGTTACATCGGATGGTAG...

Protein

2 records

下载 Protein FASTA

XP_057763955.1
MEYERIHKVQTGILSPSKLRIKLMGPHHQKKKDGSNSNSSRTSPSKMEDSEFVNNSLLAAQNGDFGEEVSNLEVLQIKSDGVTSDGSQGDGNLLQSKELGAKDNGDASRFRMQLLSKVDTGNSSSVHPVRMCEDENLDYDSTSSFEFHKGERSLHHSMTRSFSRPMSSKWNDAEKWIMNKQNVQSNISKKANLQNQVNRQPATNMVRVVPESTSSENKPSVKRVDFCQSASQMGSGKFALIDLCPESKDLGEVDDTNMPC...

XP_057763956.1
MEYERIHKVQTGILSPSKLRIKLMGPHHQKKKDGSNSNSSRTSPSKMEDSEFVNNSLLAAQNGDFGEEVSNLEVLQIKSDGVTSDGSQGDGNLLQSKELGAKDNGDASRFRMQLLSKVDTGNSSSVHPVRMCEDENLDYDSTSSFEFHKGERSLHHSMTRSFSRPMSSKWNDAEKWIMNKQNVQSNISKKANLQNQVNRQPATNMVRVVPESTSSENKPSVKRVDFCQSASQMGSGKFALIDLCPESKDLGEVDDTNMPC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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