当前解析结果
SmilChr05G000445| 统一新 Gene ID | SmilChr05G000445 |
|---|---|
| 名称 | SmilChr05G000445 |
| 描述 | putative hydrolase C777.06c |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 3379568 - 3386593 / - |
| NCBI Gene ID | LOC130985165 |
|---|---|
| GeneID | 130985165 |
| locus_tag | - |
| NCBI Name | LOC130985165 |
| 原始查询 | SmilChr05G000445 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative hydrolase C777.06c |
| 产物 | putative hydrolase C777.06c |
| Arabidopsis | AT1G30300 (AT1G30300)Metallo-hydrolase/oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839910] identity=80.9; qcov=0.978; evalue=1.09e-159; confidence=high |
| Rice | Os03g0643250- identity=66.3; qcov=0.985; evalue=3.73e-125; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF12706 (Lactamase_B_2); PF23023 (Anti-Pycsar_Apyc1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985165 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057763959.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057763959.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057763959.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057763962.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057763959.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:3381206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:3381616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B102,B17,B4,C49 |
Chr5:3381846 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B129 |
Chr5:3382491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,C53,C71 |
Chr5:3383568 |
CT |
C |
1bp_deletion | frameshift_variant | 63 | A10,A18,A23,A24,A3,A6,A7,A9,B1,B104,B118,B119,B122,B124,B128,B129,B13,B130,B140,B18,B20,B22,B28,B3,B37,B38,B41,B48,B50,B57,B58,B61,B72,B76,B8,B81,B86,B89,B94,B95,B97,C1,C16,C29,C33,C37,C39,C4,C40,C44,C47,C54,C57,C6,C62,C65,C68,C76,C80,C83,C84,C86,D6 |
Chr5:3383571 |
C |
CT |
1bp_insertion | frameshift_variant | 135 | A1,A10,A11,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A5,A7,B10,B100,B101,B102,B103,B104,B105,B106,B108,B11,B111,B112,B114,B115,B118,B12,B123,B126,B127,B129,B132,B133,B136,B137,B138,B139,B15,B17,B18,B19,B20,B24,B25,B26,B28,B29,B31,B34,B39,B40,B41,B44,B45,B46,B47,B5,B52,B53,B54,B55,B56,B59,B6,B60,B63,B64,B66,B68,B69,B70,B73,B74,B79,B80,B81,B82,B83,B84,B88,B9,B91,B96,B97,B98,C11,C12,C15,C19,C2,C24,C25,C26,C28,C32,C33,C34,C36,C41,C43,C47,C48,C50,C52,C53,C55,C57,C58,C60,C61,C64,C67,C68,C69,C7,C70,C72,C74,C77,C78,C80,C81,C82,C87,D1,D10,D11,D4,D8 |
Chr5:3383601 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | B20,B22,B50,B58,B61,C44,C62,C68 |
Chr5:3383625 |
TC |
T |
1bp_deletion | frameshift_variant | 94 | A11,A14,A15,A16,A20,A22,A24,A5,B100,B102,B103,B105,B106,B107,B11,B112,B114,B117,B118,B12,B122,B127,B129,B13,B136,B138,B139,B17,B18,B19,B24,B25,B3,B31,B44,B45,B47,B5,B50,B52,B53,B54,B55,B56,B59,B60,B64,B66,B68,B69,B70,B71,B73,B74,B75,B76,B79,B82,B83,B84,B9,B96,B97,B98,C12,C19,C28,C32,C34,C36,C40,C43,C47,C48,C55,C57,C58,C60,C61,C64,C67,C68,C69,C70,C72,C74,C77,C78,C82,C84,D1,D10,D11,D4 |
Chr5:3383641 |
AAT |
A |
2bp_deletion | frameshift_variant | 13 | A3,B1,B3,B38,B50,B57,B8,C29,C33,C54,C65,C83,C86 |
Chr5:3383652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr5:3383667 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B48 |
Chr5:3383676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B110,B41,B44,B77,B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763959.1PF23023
Anti-Pycsar_Apyc1 79-266 aa
PF12706
Lactamase_B_2 82-285 aa
XP_057763960.1PF23023
Anti-Pycsar_Apyc1 79-266 aa
PF12706
Lactamase_B_2 82-285 aa
XP_057763961.1PF23023
Anti-Pycsar_Apyc1 79-266 aa
PF12706
Lactamase_B_2 82-285 aa
XP_057763962.1PF23023
Anti-Pycsar_Apyc1 24-211 aa
PF12706
Lactamase_B_2 27-230 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763959.1 |
Pfam | PF23023 |
Anti-Pycsar_Apyc1 | Family | 79 | 266 | 1.4e-07 | 32.2 | Anti-Pycsar protein Apyc1 |
XP_057763959.1 |
Pfam | PF12706 |
Lactamase_B_2 | Domain | 82 | 285 | 3e-22 | 79.9 | Beta-lactamase superfamily domain |
XP_057763960.1 |
Pfam | PF23023 |
Anti-Pycsar_Apyc1 | Family | 79 | 266 | 1.4e-07 | 32.2 | Anti-Pycsar protein Apyc1 |
XP_057763960.1 |
Pfam | PF12706 |
Lactamase_B_2 | Domain | 82 | 285 | 3e-22 | 79.9 | Beta-lactamase superfamily domain |
XP_057763961.1 |
Pfam | PF23023 |
Anti-Pycsar_Apyc1 | Family | 79 | 266 | 1.4e-07 | 32.2 | Anti-Pycsar protein Apyc1 |
XP_057763961.1 |
Pfam | PF12706 |
Lactamase_B_2 | Domain | 82 | 285 | 3e-22 | 79.9 | Beta-lactamase superfamily domain |
XP_057763962.1 |
Pfam | PF23023 |
Anti-Pycsar_Apyc1 | Family | 24 | 211 | 1e-07 | 32.7 | Anti-Pycsar protein Apyc1 |
XP_057763962.1 |
Pfam | PF12706 |
Lactamase_B_2 | Domain | 27 | 230 | 1.7e-22 | 80.7 | Beta-lactamase superfamily domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。