Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000446`

染色体: Chr05 坐标: 3387694-3391765 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000446`
名称	SmilChr05G000446
描述	pentatricopeptide repeat-containing protein At5g41170, mitochondrial
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3387694 - 3391765 / `+`

ID 对照

NCBI Gene ID	`LOC130985164`
GeneID	`130985164`
locus_tag	`-`
NCBI Name	`LOC130985164`
原始查询	`SmilChr05G000446`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g41170, mitochondrial
产物	pentatricopeptide repeat-containing protein At5g41170%2C mitochondrial
Arabidopsis	`AT1G30290` (AT1G30290) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839909] identity=63.5; qcov=0.829; evalue=0; confidence=high
Rice	`Os12g0615600` - identity=56.5; qcov=0.786; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130985164

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057763958.1`
2	Chloroplast	叶绿体	0.20000	`XP_057763958.1`
3	Nucleus	细胞核	0.00000	`XP_057763958.1`
4	Chromosome	染色体	0.00000	`XP_057763958.1`
5	Centromere	着丝粒	0.00000	`XP_057763958.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3388107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr5:3388315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,C22
`Chr5:3388421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,C23,C74,D7
`Chr5:3388449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr5:3388467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr5:3388965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr5:3389043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr5:3389079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr5:3389097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr5:3389112`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr5:3389163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr5:3389298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763958.1

838 aa

419

838

PPR

PPR_long

PPR_3

PPR_2

PPR_1

PPR_3

PPR_2

PPR

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

TPR_24

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_1

PPR

PF01535 PPR 277-304 aa PF17177 PPR_long 282-437 aa PF13812 PPR_3 295-354 aa PF13041 PPR_2 307-354 aa PF12854 PPR_1 338-369 aa PF13812 PPR_3 338-388 aa PF13041 PPR_2 341-390 aa PF01535 PPR 344-374 aa PF13041 PPR_2 376-422 aa PF01535 PPR 379-407 aa PF12854 PPR_1 409-439 aa PF13041 PPR_2 412-461 aa PF01535 PPR 415-445 aa PF13812 PPR_3 437-492 aa PF13041 PPR_2 450-496 aa PF01535 PPR 453-480 aa PF17177 PPR_long 453-564 aa PF13812 PPR_3 471-527 aa PF12854 PPR_1 478-510 aa PF13041 PPR_2 482-531 aa PF01535 PPR 485-515 aa PF12854 PPR_1 513-543 aa PF01535 PPR 520-543 aa PF23276 TPR_24 553-648 aa PF01535 PPR 554-584 aa PF01535 PPR 592-619 aa PF13812 PPR_3 609-670 aa PF12854 PPR_1 617-649 aa PF13041 PPR_2 622-669 aa PF01535 PPR 625-649 aa PF17177 PPR_long 636-771 aa PF13812 PPR_3 644-703 aa PF12854 PPR_1 655-684 aa PF13041 PPR_2 656-705 aa PF01535 PPR 659-689 aa PF23276 TPR_24 659-748 aa PF12854 PPR_1 687-718 aa PF01535 PPR 694-719 aa PF01535 PPR 728-753 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	277	304	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF17177`	PPR_long	Repeat	282	437	6.3e-31	108.1	Pentacotripeptide-repeat region of PRORP
`XP_057763958.1`	Pfam	`PF13812`	PPR_3	Repeat	295	354	3.3e-51	171.9	Pentatricopeptide repeat domain
`XP_057763958.1`	Pfam	`PF13041`	PPR_2	Repeat	307	354	1.2e-111	365.4	PPR repeat family
`XP_057763958.1`	Pfam	`PF12854`	PPR_1	Repeat	338	369	7.6e-110	359.0	PPR repeat
`XP_057763958.1`	Pfam	`PF13812`	PPR_3	Repeat	338	388	3.3e-51	171.9	Pentatricopeptide repeat domain
`XP_057763958.1`	Pfam	`PF13041`	PPR_2	Repeat	341	390	1.2e-111	365.4	PPR repeat family
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	344	374	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF13041`	PPR_2	Repeat	376	422	1.2e-111	365.4	PPR repeat family
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	379	407	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF12854`	PPR_1	Repeat	409	439	7.6e-110	359.0	PPR repeat
`XP_057763958.1`	Pfam	`PF13041`	PPR_2	Repeat	412	461	1.2e-111	365.4	PPR repeat family
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	415	445	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF13812`	PPR_3	Repeat	437	492	3.3e-51	171.9	Pentatricopeptide repeat domain
`XP_057763958.1`	Pfam	`PF13041`	PPR_2	Repeat	450	496	1.2e-111	365.4	PPR repeat family
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	453	480	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF17177`	PPR_long	Repeat	453	564	6.3e-31	108.1	Pentacotripeptide-repeat region of PRORP
`XP_057763958.1`	Pfam	`PF13812`	PPR_3	Repeat	471	527	3.3e-51	171.9	Pentatricopeptide repeat domain
`XP_057763958.1`	Pfam	`PF12854`	PPR_1	Repeat	478	510	7.6e-110	359.0	PPR repeat
`XP_057763958.1`	Pfam	`PF13041`	PPR_2	Repeat	482	531	1.2e-111	365.4	PPR repeat family
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	485	515	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF12854`	PPR_1	Repeat	513	543	7.6e-110	359.0	PPR repeat
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	520	543	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF23276`	TPR_24	Repeat	553	648	1.2e-33	116.6	Pentatricopeptide repeat-containing protein
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	554	584	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	592	619	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF13812`	PPR_3	Repeat	609	670	3.3e-51	171.9	Pentatricopeptide repeat domain
`XP_057763958.1`	Pfam	`PF12854`	PPR_1	Repeat	617	649	7.6e-110	359.0	PPR repeat
`XP_057763958.1`	Pfam	`PF13041`	PPR_2	Repeat	622	669	1.2e-111	365.4	PPR repeat family
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	625	649	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF17177`	PPR_long	Repeat	636	771	6.3e-31	108.1	Pentacotripeptide-repeat region of PRORP
`XP_057763958.1`	Pfam	`PF13812`	PPR_3	Repeat	644	703	3.3e-51	171.9	Pentatricopeptide repeat domain
`XP_057763958.1`	Pfam	`PF12854`	PPR_1	Repeat	655	684	7.6e-110	359.0	PPR repeat
`XP_057763958.1`	Pfam	`PF13041`	PPR_2	Repeat	656	705	1.2e-111	365.4	PPR repeat family
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	659	689	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF23276`	TPR_24	Repeat	659	748	1.2e-33	116.6	Pentatricopeptide repeat-containing protein
`XP_057763958.1`	Pfam	`PF12854`	PPR_1	Repeat	687	718	7.6e-110	359.0	PPR repeat
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	694	719	1.7e-83	269.9	PPR repeat
`XP_057763958.1`	Pfam	`PF01535`	PPR	Repeat	728	753	1.7e-83	269.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057907975.1
AAAAAAGTTTTAATTTAGAAAAAAGTGAATAACGTTCATGTAGCTCAAAATCCAATTCCAGCTCATTTGTTCATTCGAGTTTCAGGCTTTCAGCTCTTCCAGCTATAAATCACAGAATATTTAAAATGTAATTTCTCAAAACCCTATTTCCAATTTCCAATTTGACTGGAAATGTCATTGAATTTCAAGAAATTTAAGAAAATTCGAGGAACTTCAGCAATCACTCATCGATTGAGTGAGATTCTTGCGTTACATACGTG...

CDS

1 records

下载 CDS FASTA

LOC130985164
ATGTCATTGAATTTCAAGAAATTTAAGAAAATTCGAGGAACTTCAGCAATCACTCATCGATTGAGTGAGATTCTTGCGTTACATACGTGTTCTTGTTCTGATTTTATCGGGCACAATTACTTCCATGAACGGTTTTTCCCTCGCATTGGAGCAATTCCATATTTTTTCTCATCGTGTTCAGCTAACAATCACAGTCACGCTTCTGATTCGGCGCCGGAAATTCGCGAGCAACGCGTGAGAAGCGATAATATTGACGATAG...

Protein

1 records

下载 Protein FASTA

XP_057763958.1
MSLNFKKFKKIRGTSAITHRLSEILALHTCSCSDFIGHNYFHERFFPRIGAIPYFFSSCSANNHSHASDSAPEIREQRVRSDNIDDSKRFYDRTAETVSKESLLSSDYNSNSWGGENCDFDGFDESDEEVEEGKSEEGSDDDEFRVLSAFDGNRARIEASRRIEVDEGDLRHPLVREICRLIDRRAAWSPKLESELKRLLRSLKPSQVCAVLRAQSDERIALNFFYWADRQWRYRHYPVVYHEMLRILSKTKLCQGAKRV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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