Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000448

染色体: Chr05 坐标: 3402604-3405141 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000448
名称SmilChr05G000448
描述uncharacterized SmilChr05G000448
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向3402604 - 3405141 / +

ID 对照

NCBI Gene IDLOC130985167
GeneID130985167
locus_tag-
NCBI NameLOC130985167
原始查询SmilChr05G000448

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839908]; symbol=AT1G30280; hit=AT1G30280; species=arabidopsis; confidence=medium
产物Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839908]; symbol=AT1G30280; hit=AT1G30280; species=arabidopsis; confidence=medium
ArabidopsisAT1G30280 (AT1G30280)
Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839908]
identity=37.6; qcov=1.12; evalue=4.99e-75; confidence=medium
RiceOs03g0198300 (OsDjC25)
-
identity=61.9; qcov=0.212; evalue=5.99e-35; confidence=weak
GOGO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130985167

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057763966.1
2 Cytoplasm 细胞质 0.40000 XP_057763965.1
3 Nucleus 细胞核 0.00000 XP_057763965.1
4 Chromosome 染色体 0.00000 XP_057763965.1
5 Centromere 着丝粒 0.00000 XP_057763965.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:3402863 C T EMS_canonical_SNV CDS_variant 1 B88
Chr5:3402922 C T EMS_canonical_SNV CDS_variant 2 C24,C72
Chr5:3403006 G A EMS_canonical_SNV CDS_variant 1 B82
Chr5:3403072 C T EMS_canonical_SNV CDS_variant 1 B44
Chr5:3403087 G A EMS_canonical_SNV CDS_variant 2 B2,B50
Chr5:3403171 G A EMS_canonical_SNV CDS_variant 2 B49,C62
Chr5:3403528 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:3403554 C T EMS_canonical_SNV CDS_variant 1 D8
Chr5:3403568 G A EMS_canonical_SNV CDS_variant 2 B30,C57
Chr5:3403627 C T EMS_canonical_SNV CDS_variant 1 A15
Chr5:3403756 C T EMS_canonical_SNV CDS_variant 2 A5,D4
Chr5:3404425 TA T 1bp_deletion frameshift_variant 39 A1,A14,A20,B1,B107,B126,B127,B128,B13,B132,B134,B138,B140,B21,B31,B32,B41,B44,B6,B72,B75,B80,B84,B85,B89,B9,B99,C18,C23,C37,C55,C63,C77,C80,C82,C87,D1,D3,D5

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057907982.1
AAGAAAAGAAAATTCCACTCAAAAGCTTTTATGTATAAAGGATAAACACATGCAAGTAGATGCATAATATCAAATTATCATAATTAGTAATCACTGCTCACAAACCACGCTCCCTCCGCCGCCGCCGTCTTCCGCCGCAAGCAAATCAGCAACAATGGACGAGTCTTGGCGAATGAGGATAGGAATGCCCACACCTCCGTCGCCGCCGCCCATACTCCAGCGGCCGAGCCACCATCTCCGGCAACCCGCCTCCGACGACC...
XM_057907983.1
AAGAAAAGAAAATTCCACTCAAAAGCTTTTATGTATAAAGGATAAACACATGCAAGTAGATGCATAATATCAAATTATCATAATTAGTAATCACTGCTCACAAACCACGCTCCCTCCGCCGCCGCCGTCTTCCGCCGCAAGCAAATCAGCAACAATGGACGAGTCTTGGCGAATGAGGATAGGAATGCCCACACCTCCGTCGCCGCCGCCCATACTCCAGCGGCCGAGCCACCATCTCCGGCAACCCGCCTCCGACGACC...

CDS

3 records

下载 CDS FASTA
LOC130985167
ATGGACGAGTCTTGGCGAATGAGGATAGGAATGCCCACACCTCCGTCGCCGCCGCCCATACTCCAGCGGCCGAGCCACCATCTCCGGCAACCCGCCTCCGACGACCACTTAAACCCGGAAGACTTCAGCGACGTCTTCGGCGGGCCACCTCGAACGATTCTCTCCCGCCAGTTCTCCTCCGGCTTCCCGCGATCGTCGTCGTCGTCCTCCTCCACGAGCTACTTCTACGAGGAGATTTTCCGGCCGCCGGAGAAGGCGCC...
LOC130985167
ATGGACGAGTCTTGGCGAATGAGGATAGGAATGCCCACACCTCCGTCGCCGCCGCCCATACTCCAGCGGCCGAGCCACCATCTCCGGCAACCCGCCTCCGACGACCACTTAAACCCGGAAGACTTCAGCGACGTCTTCGGCGGGCCACCTCGAACGATTCTCTCCCGCCAGTTCTCCTCCGGCTTCCCGCGATCGTCGTCGTCGTCCTCCTCCACGAGCTACTTCTACGAGGAGATTTTCCGGCCGCCGGAGAAGGCGCC...

Protein

3 records

下载 Protein FASTA
XP_057763965.1
MDESWRMRIGMPTPPSPPPILQRPSHHLRQPASDDHLNPEDFSDVFGGPPRTILSRQFSSGFPRSSSSSSSTSYFYEEIFRPPEKAPPPPGRRSGRSLPEFRIPGHQKREKTGFYSDIFGRDDERVVRSRSRSKTSSSSVLSSEELSPLRPAFSFDGGGGDDVSSFAPKLRPINVRTTWNSTRMGHEDQLRQQNMMPPFSSIPHSHNGPDNLRSFPFGLSRRNASPETISLEPVSNGSFRVSADDMELNNSPSSAVSSVC...
XP_057763966.1
MDESWRMRIGMPTPPSPPPILQRPSHHLRQPASDDHLNPEDFSDVFGGPPRTILSRQFSSGFPRSSSSSSSTSYFYEEIFRPPEKAPPPPGRRSGRSLPEFRIPGHQKREKTGFYSDIFGRDDERVVRSRSRSKTSSSSVLSSEELSPLRPAFSFDGGGGDDVSSFAPKLRPINVRTTWNSTRMGHEDQLRQQNMMPPFSSIPHSHNGPDNLRSFPFGLSRRNASPETISLEPVSNGSFRVSADDMELNNSPSSAVSSVC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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