当前解析结果
SmilChr05G000466| 统一新 Gene ID | SmilChr05G000466 |
|---|---|
| 名称 | SmilChr05G000466 |
| 描述 | receptor like protein 29-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 3518563 - 3520476 / + |
| NCBI Gene ID | LOC130985187 |
|---|---|
| GeneID | 130985187 |
| locus_tag | - |
| NCBI Name | LOC130985187 |
| 原始查询 | SmilChr05G000466 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor like protein 29-like |
| 产物 | receptor like protein 29-like |
| Arabidopsis | AT2G42800 (RLP29)receptor like protein 29 [Source:NCBI gene (formerly Entrezgene);Acc:818880] identity=41.6; qcov=0.78; evalue=2.58e-79; confidence=medium |
| Rice | Os01g0729400- identity=40.6; qcov=0.792; evalue=1.99e-74; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985187 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057763997.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057763997.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057763997.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057763997.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057763997.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:3518979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr5:3519062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,B41,B49 |
Chr5:3519072 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr5:3519072 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B104 |
Chr5:3519086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C46,D10 |
Chr5:3519089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr5:3519158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,B98,C48 |
Chr5:3519178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B53,B6,B93,C67,D2 |
Chr5:3519180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B98,C48 |
Chr5:3519200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B53,B6,C35,C67,D2 |
Chr5:3519217 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B72 |
Chr5:3519217 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057763997.1PF23598
LRR_14 96-240 aa
PF13855
LRR_8 133-193 aa
PF00560
LRR_1 158-180 aa
PF00560
LRR_1 182-203 aa
PF00560
LRR_1 206-228 aa
PF00560
LRR_1 230-252 aa
PF00560
LRR_1 255-276 aa
PF13855
LRR_8 302-361 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057763997.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 96 | 240 | 2e-24 | 86.7 | Leucine-rich repeat region |
XP_057763997.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 133 | 193 | 4.3e-28 | 97.6 | Leucine rich repeat |
XP_057763997.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 158 | 180 | 8.7e-26 | 85.2 | Leucine Rich Repeat |
XP_057763997.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 182 | 203 | 8.7e-26 | 85.2 | Leucine Rich Repeat |
XP_057763997.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 206 | 228 | 8.7e-26 | 85.2 | Leucine Rich Repeat |
XP_057763997.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 230 | 252 | 8.7e-26 | 85.2 | Leucine Rich Repeat |
XP_057763997.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 255 | 276 | 8.7e-26 | 85.2 | Leucine Rich Repeat |
XP_057763997.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 302 | 361 | 4.3e-28 | 97.6 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。