Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000467`

染色体: Chr05 坐标: 3523215-3526859 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000467`
名称	SmilChr05G000467
描述	glycolate oxidase
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3523215 - 3526859 / `+`

ID 对照

NCBI Gene ID	`LOC130985188`
GeneID	`130985188`
locus_tag	`-`
NCBI Name	`LOC130985188`
原始查询	`SmilChr05G000467`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycolate oxidase
产物	glycolate oxidase
Arabidopsis	`AT4G18360` (GOX3) Aldolase-type TIM barrel family protein [Source:NCBI gene (formerly Entrezgene);Acc:827563] identity=83.3; qcov=0.957; evalue=0; confidence=high
Rice	`Os03g0786100` (OsGLO1) - identity=79.7; qcov=0.987; evalue=0; confidence=high
GO	GO:0010181 (FMN binding); GO:0016491 (oxidoreductase activity)
KEGG	smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00478 (IMPDH); PF01070 (FMN_dh); PF01645 (Glu_synthase)
InterPro	-
eggNOG	-
NR	GeneID:130985188

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057763998.1`
2	Mitochondrion	线粒体	0.40000	`XP_057763998.1`
3	Nucleus	细胞核	0.00000	`XP_057763998.1`
4	Chromosome	染色体	0.00000	`XP_057763998.1`
5	Centromere	着丝粒	0.00000	`XP_057763998.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3524588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr5:3524590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B64
`Chr5:3524616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B123,B20,C7,C71
`Chr5:3524843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,C27
`Chr5:3524871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:3524877`	`C`	`CCG`	2bp_insertion	frameshift_variant	4	A2,A25,B79,C54
`Chr5:3524877`	`C`	`CCG`	2bp_insertion	CDS_variant	4	A2,A25,B79,C54
`Chr5:3525055`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B115,B53
`Chr5:3525055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,B53
`Chr5:3525067`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B60,B79,C62
`Chr5:3525075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B109,C79
`Chr5:3525111`	`C`	`T`	EMS_canonical_SNV	stop_gained	26	A1,A13,A14,A24,B128,B129,B132,B17,B42,B43,B46,B50,B68,B81,B97,C12,C13,C16,C31,C41,C47,C55,C57,C84,D2,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763998.1

375 aa

188

375

FMN_dh

IMPDH

Glu_synthase

PF01070 FMN_dh 19-360 aa PF00478 IMPDH 271-317 aa PF01645 Glu_synthase 284-321 aa

XP_057763999.1

375 aa

188

375

FMN_dh

IMPDH

Glu_synthase

PF01070 FMN_dh 19-360 aa PF00478 IMPDH 271-317 aa PF01645 Glu_synthase 284-321 aa

XP_057764000.1

375 aa

188

375

FMN_dh

IMPDH

Glu_synthase

PF01070 FMN_dh 19-360 aa PF00478 IMPDH 271-317 aa PF01645 Glu_synthase 284-321 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763998.1`	Pfam	`PF01070`	FMN_dh	Domain	19	360	5.3e-141	470.4	FMN-dependent dehydrogenase
`XP_057763998.1`	Pfam	`PF00478`	IMPDH	Domain	271	317	3.1e-06	27.2	IMP dehydrogenase / GMP reductase domain
`XP_057763998.1`	Pfam	`PF01645`	Glu_synthase	Domain	284	321	9.5e-05	22.4	Conserved region in glutamate synthase
`XP_057763999.1`	Pfam	`PF01070`	FMN_dh	Domain	19	360	5.3e-141	470.4	FMN-dependent dehydrogenase
`XP_057763999.1`	Pfam	`PF00478`	IMPDH	Domain	271	317	3.1e-06	27.2	IMP dehydrogenase / GMP reductase domain
`XP_057763999.1`	Pfam	`PF01645`	Glu_synthase	Domain	284	321	9.5e-05	22.4	Conserved region in glutamate synthase
`XP_057764000.1`	Pfam	`PF01070`	FMN_dh	Domain	19	360	5.3e-141	470.4	FMN-dependent dehydrogenase
`XP_057764000.1`	Pfam	`PF00478`	IMPDH	Domain	271	317	3.1e-06	27.2	IMP dehydrogenase / GMP reductase domain
`XP_057764000.1`	Pfam	`PF01645`	Glu_synthase	Domain	284	321	9.5e-05	22.4	Conserved region in glutamate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908017.1
TTTGGAATAATGATGGTATATATTGGTATTATAAATTTATTACTAAAAAATCAGCAACGAAAACGGTTATTTCCTTGTGTAAATTGTCTTGGTCGTATCAATATAGCATTCCATATTTTGGTTGGACTGCTCAAATCTCAGCTGCGTATCATCTTTGAACTCCTCTCTCTCTCTCTCTCTCCGATACTTGAAATTGCTTTGGCTTTGCTGTGATAGAGTGTTGTTCTAGCCGCCTTTTGCTTTATTCTCGAGGTGGCATG...

XM_057908015.1
ATTTATTACTAAAAAATCAGCAACGAAAACGGTTATTTCCTTGTGTAAATTGTCTTGGTCGTATCAATATAGCATTCCATATTTTGGTTGGACTGCTCAAATCTCAAGGTGGCATGACTTCCTGGAAAATGGAAAACATTACCAATGTTATGGAGTTTGAGCCCATTGCCAGGGAGAAATTGCCCAAGATGGTGTACGATTATTATGCGTCTGGCGCTGAGGACCAGTGGACTCTCCAAGAAAACCGCAACGCCTTTTCT...

CDS

3 records

下载 CDS FASTA

LOC130985188
ATGACTTCCTGGAAAATGGAAAACATTACCAATGTTATGGAGTTTGAGCCCATTGCCAGGGAGAAATTGCCCAAGATGGTGTACGATTATTATGCGTCTGGCGCTGAGGACCAGTGGACTCTCCAAGAAAACCGCAACGCCTTTTCTAGGATACTGTTTCGCCCTCGCATTCTGATTGATGTTAGCAAGATCGATACAATTACAACCGTTTTGGGATACAAAATCTCAATGCCGATCATGGTTGCTCCGACAGCAATGCA...

Protein

3 records

下载 Protein FASTA

XP_057763998.1
MTSWKMENITNVMEFEPIAREKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDTITTVLGYKISMPIMVAPTAMQKMAHPEGELATARAAAATGTIMTLSSWATSSVEEVASTGPGIQFFQLYVLKDRNIVQQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFALPPHLTLKNFEGLDLGSIDRTNDSGLATYVAGQVDRSLNWKDVKWLQTITKLPILVKGVLTAEDASLAVQAGVAGIIVSNH...

XP_057763999.1
MTSWKMENITNVMEFEPIAREKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDTITTVLGYKISMPIMVAPTAMQKMAHPEGELATARAAAATGTIMTLSSWATSSVEEVASTGPGIQFFQLYVLKDRNIVQQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFALPPHLTLKNFEGLDLGSIDRTNDSGLATYVAGQVDRSLNWKDVKWLQTITKLPILVKGVLTAEDASLAVQAGVAGIIVSNH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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