Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000470`

染色体: Chr05 坐标: 3546741-3549984 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000470`
名称	SmilChr05G000470
描述	pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3546741 - 3549984 / `+`

ID 对照

NCBI Gene ID	`LOC130985192`
GeneID	`130985192`
locus_tag	`-`
NCBI Name	`LOC130985192`
原始查询	`SmilChr05G000470`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like
产物	pyruvate dehydrogenase E1 component subunit beta-3%2C chloroplastic-like
Arabidopsis	`AT2G34590` (AT2G34590) Transketolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818024] identity=82; qcov=1.01; evalue=0; confidence=high
Rice	`Os12g0616900` - identity=85.8; qcov=0.843; evalue=0; confidence=high
GO	GO:0004739 (pyruvate dehydrogenase (acetyl-transferring) activity); GO:0006086 (pyruvate decarboxylation to acetyl-CoA)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00785 (Lipoic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF02779 (Transket_pyr); PF02780 (Transketolase_C)
InterPro	-
eggNOG	-
NR	GeneID:130985192

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057764003.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057764003.1`
3	Nucleus	细胞核	0.00000	`XP_057764003.1`
4	Chromosome	染色体	0.00000	`XP_057764003.1`
5	Centromere	着丝粒	0.00000	`XP_057764003.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3547706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr5:3548997`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B44,B9,C65
`Chr5:3549006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B33,C27
`Chr5:3549342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr5:3549544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr5:3549708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B33,C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764003.1

404 aa

202

404

Transket_pyr

Transketolase_C

PF02779 Transket_pyr 88-258 aa PF02780 Transketolase_C 274-395 aa

XP_057764004.1

403 aa

202

403

Transket_pyr

Transketolase_C

PF02779 Transket_pyr 87-257 aa PF02780 Transketolase_C 273-394 aa

XP_057764005.1

402 aa

201

402

Transket_pyr

Transketolase_C

PF02779 Transket_pyr 86-256 aa PF02780 Transketolase_C 272-393 aa

XP_057764006.1

401 aa

200

401

Transket_pyr

Transketolase_C

PF02779 Transket_pyr 85-255 aa PF02780 Transketolase_C 271-392 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764003.1`	Pfam	`PF02779`	Transket_pyr	Domain	88	258	1.2e-44	152.7	Transketolase, pyrimidine binding domain
`XP_057764003.1`	Pfam	`PF02780`	Transketolase_C	Domain	274	395	2.1e-37	128.5	Transketolase, C-terminal domain
`XP_057764004.1`	Pfam	`PF02779`	Transket_pyr	Domain	87	257	1.2e-44	152.8	Transketolase, pyrimidine binding domain
`XP_057764004.1`	Pfam	`PF02780`	Transketolase_C	Domain	273	394	2.2e-37	128.4	Transketolase, C-terminal domain
`XP_057764005.1`	Pfam	`PF02779`	Transket_pyr	Domain	86	256	1.2e-44	152.8	Transketolase, pyrimidine binding domain
`XP_057764005.1`	Pfam	`PF02780`	Transketolase_C	Domain	272	393	2.2e-37	128.5	Transketolase, C-terminal domain
`XP_057764006.1`	Pfam	`PF02779`	Transket_pyr	Domain	85	255	1.2e-44	152.8	Transketolase, pyrimidine binding domain
`XP_057764006.1`	Pfam	`PF02780`	Transketolase_C	Domain	271	392	2.3e-37	128.4	Transketolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057908022.1
CGGATGCAGAGGATTAGGCAGCATGATCAAAGTGGAAACTGTGGCACTGAAACATGTGGTTCAGCTCTCATGCTGTTCTTACCTTTTCCTGTATCTTTTCCTCTTTCCGCCGTAACTCAAATTCGCCGCCGCCGCTTCTCCACCAGCATCTTCGTGAAAAGCGGGGAATTCTTGTTCTCCTTTGGAATAATTTCTTAGTTTTTGCTGTTTTGATCAGTACGCTGCATTGGTTGTACGATTGAGGAGTTTCGGATCATCTC...

XM_057908020.1
ATCAAAGTGGAAACTGTGGCACTGAAACATGTGGTTCAGCTCTCATGCTGTTCTTACCTTTTCCTGTATCTTTTCCTCTTTCCGCCGTAACTCAAATTCGCCGCCGCCGCTTCTCCACCAGCATCTTCGTGAAAAGCGGGGAATTCTTGTTCTCCTTTGGAATAATTTCTTAGTTTTTGCTGTTTTGATCAGTACGCTGCATTGGTTGTACGATTGAGGAGTTTCGGATCATCTCTCGAATCTGTATCTGAATGGCGGCC...

CDS

4 records

下载 CDS FASTA

LOC130985192
ATGGCGGCCACGATTCTGCATGGAGTTGGAGCTACGACGGCTCTCTCATCGATCAATTACAATAATTCTCGCAGATCGCTCCCAGAGAGGAAAAGAACTTCTCTTGTCATTCAATGTGATGGAAGTTTGTCGTCTGGATTGAACATCAGCAATAACAGGGGGGCGAAGTTGTCTACTAATGCAGTTGCACAGACGAAGCAAGAGAATGTAACAGCTTCTACTACATCCAAGCCCGGTCTCAGGCATGAACTATTGCTTTT...

Protein

4 records

下载 Protein FASTA

XP_057764003.1
MAATILHGVGATTALSSINYNNSRRSLPERKRTSLVIQCDGSLSSGLNISNNRGAKLSTNAVAQTKQENVTASTTSKPGLRHELLLFEALREGLEEEMERDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSDNPVILFEHVLLYNLK...

XP_057764004.1
MAATILHGVGATTALSSINYNNSRRSLPERKRTSLVIQCDGSLSSGLNISNNRGAKLSTNAVATKQENVTASTTSKPGLRHELLLFEALREGLEEEMERDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSDNPVILFEHVLLYNLKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器