当前解析结果
SmilChr05G000485| 统一新 Gene ID | SmilChr05G000485 |
|---|---|
| 名称 | SmilChr05G000485 |
| 描述 | gibberellin 2-beta-dioxygenase-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 3787799 - 3789485 / - |
| NCBI Gene ID | LOC130985210 |
|---|---|
| GeneID | 130985210 |
| locus_tag | - |
| NCBI Name | LOC130985210 |
| 原始查询 | SmilChr05G000485 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | gibberellin 2-beta-dioxygenase-like |
| 产物 | gibberellin 2-beta-dioxygenase-like |
| Arabidopsis | AT1G30040 (GA2OX2)gibberellin 2-oxidase [Source:NCBI gene (formerly Entrezgene);Acc:839883] identity=55.3; qcov=0.879; evalue=6.33e-133; confidence=high |
| Rice | Os01g0757200 (GA2OX3)- identity=51.8; qcov=0.871; evalue=2.65e-114; confidence=high |
| GO | GO:0009416 (response to light stimulus); GO:0045487 (gibberellin catabolic process); GO:0052634 (GO:0052634) |
| KEGG | smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985210 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057764026.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057764026.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057764026.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057764026.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057764026.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:3788287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:3788740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B134,B95,C28 |
Chr5:3788747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C13,D7 |
Chr5:3788762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B41 |
Chr5:3788771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B7,C33,C58 |
Chr5:3788961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C69 |
Chr5:3788962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,D2 |
Chr5:3788981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C54,D2 |
Chr5:3789102 |
G |
A |
EMS_canonical_SNV | stop_gained | 34 | A22,A3,A5,A9,B101,B108,B110,B130,B2,B26,B36,B41,B51,B52,B59,B64,B79,B83,B84,B86,B94,C16,C28,C29,C33,C38,C39,C45,C7,C72,C75,C80,C87,D1 |
Chr5:3789147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr5:3789169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B64,C80 |
Chr5:3789227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764026.1PF14226
DIOX_N 65-152 aa
PF03171
2OG-FeII_Oxy 215-317 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764026.1 |
Pfam | PF14226 |
DIOX_N | Family | 65 | 152 | 6.3e-13 | 50.1 | non-haem dioxygenase in morphine synthesis N-terminal |
XP_057764026.1 |
Pfam | PF03171 |
2OG-FeII_Oxy | Domain | 215 | 317 | 8.8e-27 | 94.1 | 2OG-Fe(II) oxygenase superfamily |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。