Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000498`

染色体: Chr05 坐标: 3896225-3899118 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000498`
名称	SmilChr05G000498
描述	ornithine transcarbamylase, chloroplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3896225 - 3899118 / `+`

ID 对照

NCBI Gene ID	`LOC130985223`
GeneID	`130985223`
locus_tag	`-`
NCBI Name	`LOC130985223`
原始查询	`SmilChr05G000498`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ornithine transcarbamylase, chloroplastic
产物	ornithine transcarbamylase%2C chloroplastic
Arabidopsis	`AT1G75330` (OTC) ornithine carbamoyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:843869] identity=76.1; qcov=1; evalue=0; confidence=high
Rice	`Os02g0704800` - identity=80.8; qcov=0.807; evalue=0; confidence=high
GO	GO:0004585 (ornithine carbamoyltransferase activity); GO:0016597 (amino acid binding); GO:0019240 (L-citrulline biosynthetic process); GO:0042450 (GO:0042450); GO:0043231 (intracellular membrane-bounded organelle)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00185 (OTCace); PF02729 (OTCace_N)
InterPro	-
eggNOG	-
NR	GeneID:130985223

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057764042.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057764042.1`
3	Nucleus	细胞核	0.00000	`XP_057764042.1`
4	Chromosome	染色体	0.00000	`XP_057764042.1`
5	Centromere	着丝粒	0.00000	`XP_057764042.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3896475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B106
`Chr5:3896548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr5:3897371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:3898018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,C10,D11
`Chr5:3898337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:3898399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B87,D5
`Chr5:3898871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C24,C71,C75,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764042.1

375 aa

188

375

OTCace_N

OTCace

PF02729 OTCace_N 73-214 aa PF00185 OTCace 220-371 aa

XP_057764043.1

374 aa

187

374

OTCace_N

OTCace

PF02729 OTCace_N 72-213 aa PF00185 OTCace 219-370 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764042.1`	Pfam	`PF02729`	OTCace_N	Domain	73	214	5.6e-48	163.5	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
`XP_057764042.1`	Pfam	`PF00185`	OTCace	Domain	220	371	7.3e-57	192.5	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
`XP_057764043.1`	Pfam	`PF02729`	OTCace_N	Domain	72	213	5.5e-48	163.5	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
`XP_057764043.1`	Pfam	`PF00185`	OTCace	Domain	219	370	7.3e-57	192.5	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009088925.1
GCCCCCGTTATCAATAGCTGCAAGCTTGCTATCAGTGACACCATCACTGACCCACTCATTCACCAACAATCACTGAGAGCACTCTTTCTCAAACCCCAATCAATGGCGGCGTCCATTTCTTGCCACCTATCCTCCGTTTCCTCACCGGAATCGGTTTCGCTCTCGTCATCGTCTTCGCATTCGCGCGGTGCTAAAAACCTCCTCAGGTTCCCCGGCGTCTCCGTAGCCACTCCTGCAATTCGTCGACGAATCTCTTGCCA...

XM_057908059.1
TGGTTTACATTTACGGCGTCGTTTCCCCAAAGAAACGTGTACGAGCCCCCGTTATCAATAGCTGCAAGCTTGCTATCAGTGACACCATCACTGACCCACTCATTCACCAACAATCACTGAGAGCACTCTTTCTCAAACCCCAATCAATGGCGGCGTCCATTTCTTGCCACCTATCCTCCGTTTCCTCACCGGAATCGGTTTCGCTCTCGTCATCGTCTTCGCATTCGCGCGGTGCTAAAAACCTCCTCAGGTTCCCCGGC...

CDS

2 records

下载 CDS FASTA

LOC130985223
ATGGCGGCGTCCATTTCTTGCCACCTATCCTCCGTTTCCTCACCGGAATCGGTTTCGCTCTCGTCATCGTCTTCGCATTCGCGCGGTGCTAAAAACCTCCTCAGGTTCCCCGGCGTCTCCGTAGCCACTCCTGCAATTCGTCGACGAATCTCTTGCCAGACAGTTTCGTCTGCGCCGCCCTCGTCCTCTGTCAATCTTAAAGCAGAACTAGGCCTTAAGGATTTCCTTCACATAAATGATTTTAACAAGGAGACCCTATT...

LOC130985223
ATGGCGGCGTCCATTTCTTGCCACCTATCCTCCGTTTCCTCACCGGAATCGGTTTCGCTCTCGTCATCGTCTTCGCATTCGCGCGGTGCTAAAAACCTCCTCAGGTTCCCCGGCGTCTCCGTAGCCACTCCTGCAATTCGTCGACGAATCTCTTGCCAGACAGTTTCGTCTGCGCCGCCCTCGTCCTCTGTCAATCTTAAAGAACTAGGCCTTAAGGATTTCCTTCACATAAATGATTTTAACAAGGAGACCCTATTGAA...

Protein

2 records

下载 Protein FASTA

XP_057764042.1
MAASISCHLSSVSSPESVSLSSSSSHSRGAKNLLRFPGVSVATPAIRRRISCQTVSSAPPSSSVNLKAELGLKDFLHINDFNKETLLKILDRAKEVKALIKSGERMYLPFKGKTMAMIFAKPSMRTRVSFETGFYLLGGHALYLGPDDIQMGKREETRDVARVLSRYNDIIMARVFAHQDILDLAKYATVPVINGLTDFNHPCQIMADALTIIEHIGQLEGTKVVYVGDGNNIVHSWLLLASVIPFHFVCACPGGFEPDP...

XP_057764043.1
MAASISCHLSSVSSPESVSLSSSSSHSRGAKNLLRFPGVSVATPAIRRRISCQTVSSAPPSSSVNLKELGLKDFLHINDFNKETLLKILDRAKEVKALIKSGERMYLPFKGKTMAMIFAKPSMRTRVSFETGFYLLGGHALYLGPDDIQMGKREETRDVARVLSRYNDIIMARVFAHQDILDLAKYATVPVINGLTDFNHPCQIMADALTIIEHIGQLEGTKVVYVGDGNNIVHSWLLLASVIPFHFVCACPGGFEPDPR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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