当前解析结果
SmilChr05G000502| 统一新 Gene ID | SmilChr05G000502 |
|---|---|
| 名称 | SmilChr05G000502 |
| 描述 | uncharacterized SmilChr05G000502 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 3914451 - 3916519 / - |
| NCBI Gene ID | LOC130985321 |
|---|---|
| GeneID | 130985321 |
| locus_tag | - |
| NCBI Name | LOC130985321 |
| 原始查询 | SmilChr05G000502 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nucleusenvelope protein [Source:NCBI gene (formerly Entrezgene);Acc:818965]; symbol=AT2G43630; hit=AT2G43630; species=arabidopsis; confidence=medium |
| 产物 | nucleusenvelope protein [Source:NCBI gene (formerly Entrezgene);Acc:818965]; symbol=AT2G43630; hit=AT2G43630; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G43630 (AT2G43630)nucleusenvelope protein [Source:NCBI gene (formerly Entrezgene);Acc:818965] identity=41.5; qcov=1.03; evalue=1.29e-42; confidence=medium |
| Rice | Os02g0606000 (OsDG2)- identity=32.8; qcov=0.803; evalue=1.16e-18; confidence=low |
| GO | GO:0009507 (chloroplast) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985321 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057764230.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057764230.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.60000 | XP_057764230.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764230.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764230.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:3915007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,C11,C69 |
Chr5:3915244 |
GC |
G |
1bp_deletion | frameshift_variant | 4 | A24,B9,C18,C22 |
Chr5:3915244 |
GC |
G |
1bp_deletion | CDS_variant | 4 | A24,B9,C18,C22 |
Chr5:3915245 |
CT |
C |
1bp_deletion | frameshift_variant | 16 | A25,A9,B115,B125,B17,B22,B64,B91,B92,C30,C49,C6,C70,C73,C84,D7 |
Chr5:3915286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,B86,C15,C52 |
Chr5:3915302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B64,B91,C84 |
Chr5:3915332 |
CA |
C |
1bp_deletion | frameshift_variant | 14 | B10,B100,B114,B117,B17,B19,B45,B65,B75,B8,B98,C3,C57,C67 |
Chr5:3915338 |
CA |
C |
1bp_deletion | frameshift_variant | 58 | A21,A25,A5,A8,B107,B108,B109,B11,B110,B111,B123,B13,B133,B138,B140,B18,B22,B24,B4,B40,B41,B46,B48,B51,B62,B7,B70,B72,B73,B74,B78,B82,B84,B85,B88,B9,B91,B92,B97,B99,C14,C21,C22,C25,C28,C30,C34,C35,C42,C50,C55,C58,C6,C64,C66,C77,C84,D11 |
Chr5:3915371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr5:3915609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。