Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000520`

染色体: Chr05 坐标: 3998101-4007614 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000520`
名称	SmilChr05G000520
描述	probable starch synthase 4, chloroplastic/amyloplastic
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	3998101 - 4007614 / `-`

ID 对照

NCBI Gene ID	`LOC130985229`
GeneID	`130985229`
locus_tag	`-`
NCBI Name	`LOC130985229`
原始查询	`SmilChr05G000520`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable starch synthase 4, chloroplastic/amyloplastic
产物	probable starch synthase 4%2C chloroplastic/amyloplastic
Arabidopsis	`AT4G18240` (SS4) starch synthase 4 [Source:NCBI gene (formerly Entrezgene);Acc:827550] identity=59.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os05g0533600` (SSIVB) - identity=57.9; qcov=0.82; evalue=0; confidence=high
GO	GO:0004373 (alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00534 (Glycos_transf_1); PF08323 (Glyco_transf_5); PF13692 (Glyco_trans_1_4)
InterPro	-
eggNOG	-
NR	GeneID:130985229

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057764051.1`
2	Chloroplast membrane	叶绿体膜	0.60000	`XP_057764051.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057764052.1`
4	Nucleus	细胞核	0.00000	`XP_057764051.1`
5	Chromosome	染色体	0.00000	`XP_057764051.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:3999757`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B7,C82
`Chr5:3999768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,B65,C36,D1
`Chr5:3999847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr5:3999899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr5:4002107`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:4002150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr5:4002717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B25,B68,C40,C82
`Chr5:4002814`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B110,C61
`Chr5:4003022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr5:4004522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr5:4004614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr5:4004749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764051.1

1068 aa

534

1068

Glyco_transf_5

Glycos_transf_1

Glyco_trans_1_4

PF08323 Glyco_transf_5 574-814 aa PF00534 Glycos_transf_1 868-1020 aa PF13692 Glyco_trans_1_4 873-1020 aa

XP_057764052.1

1051 aa

526

1051

Glyco_transf_5

Glycos_transf_1

Glyco_trans_1_4

PF08323 Glyco_transf_5 557-797 aa PF00534 Glycos_transf_1 851-1003 aa PF13692 Glyco_trans_1_4 856-1003 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764051.1`	Pfam	`PF08323`	Glyco_transf_5	Domain	574	814	4.3e-67	227.0	Starch synthase catalytic domain
`XP_057764051.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	868	1020	2.2e-08	34.6	Glycosyl transferases group 1
`XP_057764051.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	873	1020	2.7e-07	31.7	Glycosyl transferases group 1
`XP_057764052.1`	Pfam	`PF08323`	Glyco_transf_5	Domain	557	797	4.2e-67	227.1	Starch synthase catalytic domain
`XP_057764052.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	851	1003	2.1e-08	34.6	Glycosyl transferases group 1
`XP_057764052.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	856	1003	2.6e-07	31.7	Glycosyl transferases group 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908069.1
AAATAACTTTTGCCGCATTCGTATATATAAATGTGAGAAGATGCGAAGCTTACGCAGAGGAAGAAGATAAAAGCGCACTTCCCCAGCTCCGAATTAAAGCTAAGCAGTCGTTGGTTCTAAGCAACCGTTTTTTTTTTTCTCTCACAATACACACACTAGAACGGTGACCGCGTGAAAAAATTGATGGAGTCGGCGCCGTCGACGTGCTTCCTCCGTCGCGGATTGGTTGGCTACGGCCTCAAGTCTGCTCAAGTCACTGT...

XM_057908068.1
AAATAACTTTTGCCGCATTCGTATATATAAATGTGAGAAGATGCGAAGCTTACGCAGAGGAAGAAGATAAAAGCGCACTTCCCCAGCTCCGAATTAAAGCTAAGCAGTCGTTGGTTCTAAGCAACCGTTTTTTTTTTTCTCTCACAATACACACACTAGAACGGTGACCGCGTGAAAAAATTGATGGAGTCGGCGCCGTCGACGTGCTTCCTCCGTCGCGGATTGGTTGGCTACGGCCTCAAGTCTGCTCAAGTCACTGT...

CDS

2 records

下载 CDS FASTA

LOC130985229
ATGGAGTCGGCGCCGTCGACGTGCTTCCTCCGTCGCGGATTGGTTGGCTACGGCCTCAAGTCTGCTCAAGTCACTGTACGGCTCTACTCTTCGTCTTGGCAGCGTTGGTACCCAACTTCTTGTAAAATGCGGCAGCGTAACTTCAGTTTGCAAAATAAGAGACAACAAGCCAAGAAAATCAATCTCCCAGCAAATACTAGTATTAAGCCAATTGATGATAACAACACTAATACGAGCAACACGCGCAAAGGTGGCATTTC...

Protein

2 records

下载 Protein FASTA

XP_057764051.1
MESAPSTCFLRRGLVGYGLKSAQVTVRLYSSSWQRWYPTSCKMRQRNFSLQNKRQQAKKINLPANTSIKPIDDNNTNTSNTRKGGISPTNSNFEPTDNSNLPEGNNSDSDQETDSSTNIPVIEYGYLEGEGCITSSQPDEVRSLHNDNVDSADGSVHFDENTSSYLPSNVIPVVSQGSRLQFFTEKKSGSTTGNGGQQRSGIGLQDLIGMIRSAEKNIHLLNAARIRALEDLEKILSEKESLQGEINNLEMKLAETDARL...

XP_057764052.1
MESAPSTCFLRRGLVGYGLKSAQVTVRLYSSSWQRWYPTSCKMRQRNFSLQNKRQQAKKINLPANTSIKPIDDNNTNTSNTRKGGISPTNSNFEPTDNSNLPEGNNSDSDQETDSSTNIPVIEYGYLEGEGCITSSQPDEVRSLHNDNVDSADGSVHFDENTSSYLPSNVIPSTTGNGGQQRSGIGLQDLIGMIRSAEKNIHLLNAARIRALEDLEKILSEKESLQGEINNLEMKLAETDARLKVAAQEKIRVELLEGQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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