Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr05G000522`

Chromosome: Chr05 Coordinates: 4008405-4011669 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr05G000522`
Name	SmilChr05G000522
Description	uncharacterized SmilChr05G000522
Chromosome / SeqID	Chr05 / NC_080391.1
Coordinates and Strand	4008405 - 4011669 / `+`

ID Mapping

NCBI Gene ID	`LOC130985326`
GeneID	`130985326`
locus_tag	`-`
NCBI Name	`LOC130985326`
Original query	`SmilChr05G000522`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827549]; symbol=AT4G18230; hit=AT4G18230; species=arabidopsis; confidence=high
Product	UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827549]; symbol=AT4G18230; hit=AT4G18230; species=arabidopsis; confidence=high
Arabidopsis	`AT4G18230` (AT4G18230) UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827549] identity=68.4; qcov=1; evalue=4.26e-100; confidence=high
Rice	`Os03g0423200` - identity=82.8; qcov=0.248; evalue=2.61e-18; confidence=weak
GO	GO:0006488 (dolichol-linked oligosaccharide biosynthetic process); GO:0043541 (UDP-N-acetylglucosamine transferase complex)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF08660 (Alg14)
InterPro	-
eggNOG	-
NR	GeneID:130985326

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057764239.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057764239.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057764239.1`
4	Nucleus	细胞核	0.00000	`XP_057764239.1`
5	Chromosome	染色体	0.00000	`XP_057764239.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr5:4009980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr5:4010593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,C12
`Chr5:4010934`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C44,C74
`Chr5:4011004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057764239.1

234 aa

117

234

Alg14

PF08660 Alg14 55-233 aa

XP_057764240.1

234 aa

117

234

Alg14

PF08660 Alg14 55-233 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057764239.1`	Pfam	`PF08660`	Alg14	Family	55	233	1.1e-65	221.6	Oligosaccharide biosynthesis protein Alg14 like
`XP_057764240.1`	Pfam	`PF08660`	Alg14	Family	55	233	1.1e-65	221.6	Oligosaccharide biosynthesis protein Alg14 like

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

2 records

Download cDNA FASTA

XM_057908256.1
ACCGATCTTTTTTAATTTATTTTAAATTTAACTATAAACTTTAATGATATTATAGCATTATTTTATTTCTAAACCAAAAAATTAATTAGTTAATTAGTAAATTAATTAGGCATTTTCATTTTTCACTTTCTGACTTGAGATCGAGAGAGTGACTGTGAGAGAGACCAGTCGTGAGTCTCGTGACTGAGAGAGGCACGACGGGGAGACAAAACTCGCCGCCTCGTGCCTGCCTGAGCAGCCTCCACTTCCGCCTTGTCGCG...

XM_057908257.1
TTTCATTTTTCACTTTCTGACTTGAGATCGAGAGAGTGACTGTGAGAGAGACCAGTCGTGAGTCTCGTGACTGAGAGAGGCACGACGGGGAGACAAAACTCGCCGCCTCGTGCCTGCCTGAGCAGCCTCCACTTCCGCCTTGTCGCGCCGTCGCCCACCCCGCCTCCGGCCTCCACCTCAGCCGACAGCCATCTCAGGAGTACTTTGTTGCTACAACTGCGATACAGAAAAATTCTTGCAATGGAGAATGGAAGCAGCTG...

CDS

2 records

Download CDS FASTA

LOC130985326
ATGGAGAATGGAAGCAGCTGTTTCTTTTCCAAAGTGGGATTCCTAAACTTTGCCATTTTGCTGATAATTGGTGTTTCTACCTTTCTTTTGTTCCGGATTTTGTATGTTATATACCGAAGCAGCAAGCAGTTACACAATAGACCTCCAGGACCTCTGAGTACCTTGATAATTCTAGGCTCAGGTGGTCACACTGCAGAGATGTTAAACCTACTAGCTGTTATGCAGATGGATAGATTCAAACCTAGATACTACATTGCTGC...

Protein

2 records

Download Protein FASTA

XP_057764239.1
MENGSSCFFSKVGFLNFAILLIIGVSTFLLFRILYVIYRSSKQLHNRPPGPLSTLIILGSGGHTAEMLNLLAVMQMDRFKPRYYIAAATDNMSLQKAHVMEDTLKNKAEAETVGTSHFMQIYRSREVGQSYLTSVGTTLAALAHALWLMIKIRPQVILCNGPGTCIPLCAIAFIFKVLGIRWSSIFYVESIARVKRLSLSGLLLYKLRMADQIFVQWPQLKSKYPRANYVGRLM

XP_057764240.1
MENGSSCFFSKVGFLNFAILLIIGVSTFLLFRILYVIYRSSKQLHNRPPGPLSTLIILGSGGHTAEMLNLLAVMQMDRFKPRYYIAAATDNMSLQKAHVMEDTLKNKAEAETVGTSHFMQIYRSREVGQSYLTSVGTTLAALAHALWLMIKIRPQVILCNGPGTCIPLCAIAFIFKVLGIRWSSIFYVESIARVKRLSLSGLLLYKLRMADQIFVQWPQLKSKYPRANYVGRLM

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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