当前解析结果
SmilChr05G000537| 统一新 Gene ID | SmilChr05G000537 |
|---|---|
| 名称 | SmilChr05G000537 |
| 描述 | uncharacterized SmilChr05G000537 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4119603 - 4126774 / - |
| NCBI Gene ID | LOC130985225 |
|---|---|
| GeneID | 130985225 |
| locus_tag | - |
| NCBI Name | LOC130985225 |
| 原始查询 | SmilChr05G000537 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | maternal effect embryo arrest 22 [Source:NCBI gene (formerly Entrezgene);Acc:818043]; symbol=MEE22; hit=AT2G34780; species=arabidopsis; confidence=low |
| 产物 | maternal effect embryo arrest 22 [Source:NCBI gene (formerly Entrezgene);Acc:818043]; symbol=MEE22; hit=AT2G34780; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G34780 (MEE22)maternal effect embryo arrest 22 [Source:NCBI gene (formerly Entrezgene);Acc:818043] identity=26; qcov=0.915; evalue=4.75e-59; confidence=low |
| Rice | Os01g0768700- identity=28.2; qcov=0.123; evalue=1.15e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985225 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764044.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057764044.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057764044.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057764044.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057764044.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4121134 |
C |
CG |
1bp_insertion | frameshift_variant | 145 | A11,A15,A16,A18,A21,A23,A24,A25,A4,A6,A7,A8,B1,B100,B103,B104,B105,B107,B108,B109,B111,B112,B118,B119,B12,B123,B124,B126,B127,B129,B130,B133,B134,B135,B136,B138,B14,B140,B16,B17,B18,B19,B20,B23,B25,B26,B29,B34,B36,B4,B40,B41,B42,B43,B44,B45,B46,B47,B5,B51,B52,B53,B55,B56,B57,B59,B60,B62,B66,B68,B69,B70,B72,B73,B74,B75,B76,B77,B78,B81,B82,B84,B85,B87,B88,B89,B9,B90,B92,B93,B94,B96,B97,B99,C1,C11,C15,C17,C18,C19,C2,C20,C21,C22,C24,C25,C27,C28,C3,C30,C32,C34,C38,C41,C42,C44,C48,C50,C51,C52,C54,C55,C56,C58,C59,C6,C61,C64,C66,C68,C69,C7,C70,C72,C74,C75,C76,C79,C86,C87,C9,D10,D3,D7,D8 |
Chr5:4121136 |
GA |
G |
1bp_deletion | frameshift_variant | 138 | A11,A16,A18,A21,A23,A24,A25,A4,A7,A8,B1,B100,B103,B104,B105,B107,B108,B109,B111,B112,B118,B119,B12,B123,B124,B126,B127,B129,B130,B133,B134,B135,B136,B138,B14,B140,B16,B17,B18,B19,B20,B23,B25,B26,B29,B34,B36,B4,B40,B41,B42,B43,B44,B45,B46,B47,B5,B51,B52,B53,B55,B56,B57,B59,B60,B62,B68,B69,B70,B72,B73,B74,B75,B76,B77,B78,B81,B82,B84,B85,B88,B89,B9,B90,B92,B93,B94,B96,B97,B99,C1,C11,C15,C17,C19,C2,C20,C24,C25,C27,C28,C3,C30,C32,C34,C38,C41,C42,C44,C48,C50,C51,C52,C54,C55,C56,C58,C59,C6,C61,C64,C66,C68,C69,C7,C70,C72,C74,C75,C76,C79,C86,C87,C9,D10,D3,D7,D8 |
Chr5:4121157 |
AC |
A |
1bp_deletion | frameshift_variant | 134 | A1,A10,A13,A14,A16,A18,A2,A22,A23,A3,A4,A9,B1,B100,B101,B102,B103,B106,B107,B108,B110,B112,B113,B115,B117,B118,B119,B120,B122,B124,B125,B127,B128,B13,B130,B131,B132,B137,B139,B15,B16,B21,B24,B25,B26,B27,B29,B3,B32,B33,B36,B38,B39,B45,B46,B49,B58,B59,B6,B60,B61,B63,B64,B65,B7,B71,B73,B76,B79,B8,B80,B82,B85,B86,B90,B92,B93,B95,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C17,C23,C24,C25,C26,C28,C29,C30,C31,C32,C33,C35,C36,C37,C39,C4,C40,C41,C43,C45,C46,C49,C51,C57,C61,C62,C63,C64,C65,C66,C68,C69,C73,C76,C77,C78,C79,C81,C82,C83,C84,C9,D1,D2,D6,D9 |
Chr5:4121160 |
C |
CT |
1bp_insertion | frameshift_variant | 136 | A1,A10,A13,A14,A16,A18,A2,A22,A23,A3,A4,A9,B1,B100,B101,B102,B103,B106,B107,B108,B110,B112,B113,B115,B117,B118,B119,B120,B122,B124,B125,B127,B128,B13,B130,B131,B132,B137,B139,B15,B16,B21,B24,B25,B26,B27,B29,B3,B32,B33,B36,B38,B39,B45,B46,B49,B50,B58,B59,B6,B60,B61,B63,B64,B65,B67,B7,B71,B73,B76,B79,B8,B80,B82,B85,B86,B90,B92,B93,B95,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C17,C23,C24,C25,C26,C28,C29,C30,C31,C32,C33,C35,C36,C37,C39,C4,C40,C41,C43,C45,C46,C49,C51,C57,C61,C62,C63,C64,C65,C66,C68,C69,C73,C76,C77,C78,C79,C81,C82,C83,C84,C9,D1,D2,D6,D9 |
Chr5:4121313 |
G |
GA |
1bp_insertion | frameshift_variant | 172 | A1,A11,A15,A16,A18,A20,A21,A23,A24,A25,A4,A5,A6,A7,A8,B1,B100,B103,B104,B105,B107,B108,B109,B111,B112,B113,B118,B119,B12,B120,B123,B124,B125,B126,B127,B129,B133,B134,B135,B136,B138,B14,B140,B16,B17,B18,B19,B2,B20,B21,B22,B23,B25,B26,B29,B31,B34,B36,B4,B40,B41,B42,B43,B44,B45,B46,B47,B5,B51,B52,B53,B54,B55,B56,B57,B59,B60,B61,B62,B63,B66,B68,B69,B70,B71,B72,B73,B74,B75,B76,B78,B8,B80,B81,B82,B84,B85,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B99,C1,C11,C13,C15,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C27,C28,C3,C30,C31,C32,C34,C35,C38,C41,C42,C44,C48,C49,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C61,C62,C64,C66,C68,C69,C7,C70,C72,C73,C74,C76,C79,C8,C80,C86,C87,C9,D1,D10,D11,D3,D6,D7,D8 |
Chr5:4121510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B54,C13,C50,C56 |
Chr5:4121525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr5:4121919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B34,B38,B39 |
Chr5:4122436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr5:4122564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,C2,C8 |
Chr5:4122625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C80 |
Chr5:4122807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。