Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000540`

染色体: Chr05 坐标: 4135896-4139749 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000540`
名称	SmilChr05G000540
描述	uncharacterized SmilChr05G000540
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4135896 - 4139749 / `-`

ID 对照

NCBI Gene ID	`LOC130985254`
GeneID	`130985254`
locus_tag	`-`
NCBI Name	`LOC130985254`
原始查询	`SmilChr05G000540`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:839860]; symbol=AT1G29820; hit=AT1G29820; species=arabidopsis; confidence=high
产物	Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:839860]; symbol=AT1G29820; hit=AT1G29820; species=arabidopsis; confidence=high
Arabidopsis	`AT1G29820` (AT1G29820) Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:839860] identity=65.3; qcov=0.995; evalue=0; confidence=high
Rice	`Os01g0664100` - identity=62; qcov=1; evalue=0; confidence=high
GO	GO:0016020 (membrane); GO:0030001 (metal ion transport); GO:0046873 (metal ion transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF01544 (CorA)
InterPro	-
eggNOG	-
NR	GeneID:130985254

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057764104.1`
2	Mitochondrion	线粒体	0.40000	`XP_057764104.1`
3	Mitochondrion membrane	线粒体膜	0.20000	`XP_057764104.1`
4	Lipid droplet	脂滴	0.20000	`XP_057764104.1`
5	Nucleus	细胞核	0.00000	`XP_057764104.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4136238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr5:4136272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B7,B79,C27
`Chr5:4136414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr5:4136821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr5:4138003`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B19
`Chr5:4138003`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr5:4138045`	`C`	`CT`	1bp_insertion	frameshift_variant	18	A4,B109,B123,B133,B134,B17,B38,B39,B60,B68,B73,B90,B92,C38,C44,C55,C74,D1
`Chr5:4138417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr5:4138435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:4138492`	`C`	`T`	EMS_canonical_SNV	stop_gained	12	A18,B129,B135,B47,B55,B69,B84,C2,C22,C34,C54,C7
`Chr5:4138676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr5:4138943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,B139

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764104.1

560 aa

280

560

CorA

PF01544 CorA 356-492 aa

XP_057764105.1

560 aa

280

560

CorA

PF01544 CorA 356-492 aa

XP_057764106.1

560 aa

280

560

CorA

PF01544 CorA 356-492 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764104.1`	Pfam	`PF01544`	CorA	Family	356	492	1.1e-11	45.3	CorA-like Mg2+ transporter protein
`XP_057764105.1`	Pfam	`PF01544`	CorA	Family	356	492	1.1e-11	45.3	CorA-like Mg2+ transporter protein
`XP_057764106.1`	Pfam	`PF01544`	CorA	Family	356	492	1.1e-11	45.3	CorA-like Mg2+ transporter protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908122.1
TTGTTCGATTTGATCCTGATTATTGTTCCAGGAACAAAAATCGAACCGGCCAAATTTGAATTTTGAAAAAAAGGATTTAAAAATCGATTCAAATTGAATGGAATTTGATGAATTGTTGTTTTTTAAAGGTAAAATTAACATAAATAAATTTGATCCGACGGTTTATACCAAATAAAGAAATTTTAGTTAAATGAGATGACACGTGGCCCTCTTTTGCATAACTTTACCACTCTTGGAACTCTCTCTCGCTTCACGTGTTG...

XM_057908123.1
CATAACTTTACCACTCTTGGAACTCTCTCTCGCTTCACGTGTTGAAGCAAATCCTAGCGTGACTGAACTCGCCGAGGCGCCGACTGTTCTCGGCAACCCTCACTTTTCTCTCCGCCGATAAAGCTTCCGTGATCTCGGTAATTCTCCTACAATCATCTTCCCTTTTTCCGAGATTCAGGATTTCTCTAGTAATTCGTGAGAGAGAAATGAGGACGAGCTAGATTTCAGCTTGTGATGTTGCTTCTCGGAATTTCTGGATG...

CDS

3 records

下载 CDS FASTA

LOC130985254
ATGAGTGCAATGAATGAGGATCAAAATGGTAAAACAAAGACGGTAGAAAATCATAGAGTTCACAGCAGTAAGGATGTCATGTCTGGGAATCAATTATGGACTGATGGACTTATTTGCGCTTTTGAGTTCATCCGACCGGCTAAAAGACCGGTCGCCCCGAAATCCACTTCAAGTATCAAACCATCTCGTAGATTAGATGATTTTAGTGTGAAGGGCCAAATGCACTATGATGGACGAACAGAGTCGAAACCCCAGATTTC...

Protein

3 records

下载 Protein FASTA

XP_057764104.1
MSAMNEDQNGKTKTVENHRVHSSKDVMSGNQLWTDGLICAFEFIRPAKRPVAPKSTSSIKPSRRLDDFSVKGQMHYDGRTESKPQISLLESEPLLELEGQTAGSSNLDGQKSQSGRVHTDERCERSCWVPIGWARISELVRTVQADAEWATQHFEFVDGEDDITVADLAAPYWERPVGPTWWCHLSAGHPNIEAWLNTAQWLHPAIRTALRDESRLISERMKHLLYEVPVRVAGGLLFELLGQSAGDPFVEEDDIPVVLR...

XP_057764105.1
MSAMNEDQNGKTKTVENHRVHSSKDVMSGNQLWTDGLICAFEFIRPAKRPVAPKSTSSIKPSRRLDDFSVKGQMHYDGRTESKPQISLLESEPLLELEGQTAGSSNLDGQKSQSGRVHTDERCERSCWVPIGWARISELVRTVQADAEWATQHFEFVDGEDDITVADLAAPYWERPVGPTWWCHLSAGHPNIEAWLNTAQWLHPAIRTALRDESRLISERMKHLLYEVPVRVAGGLLFELLGQSAGDPFVEEDDIPVVLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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