Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000546`

染色体: Chr05 坐标: 4163778-4168786 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000546`
名称	SmilChr05G000546
描述	protein MEI2-like 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4163778 - 4168786 / `-`

ID 对照

NCBI Gene ID	`LOC130985240`
GeneID	`130985240`
locus_tag	`-`
NCBI Name	`LOC130985240`
原始查询	`SmilChr05G000546`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein MEI2-like 2
产物	protein MEI2-like 2
Arabidopsis	`AT1G29400` (ML5) MEI2-like protein 5 [Source:NCBI gene (formerly Entrezgene);Acc:839816] identity=51.3; qcov=1.07; evalue=0; confidence=high
Rice	`Os02g0719800` (ML2) - identity=49.3; qcov=1.09; evalue=0; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF04059 (RRM_2); PF13893 (RRM_5)
InterPro	-
eggNOG	-
NR	GeneID:130985240

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057764068.1`
2	Cytoplasm	细胞质	0.80000	`XP_057764068.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057764068.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057764068.1`
5	Cytosol	细胞质基质	0.20000	`XP_057764074.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4164088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr5:4164482`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	C85
`Chr5:4164482`	`TCG`	`T`	2bp_deletion	CDS_variant	1	C85
`Chr5:4164650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr5:4164657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:4164684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr5:4165129`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr5:4165203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr5:4165381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B114,C47
`Chr5:4165403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,B33,B75
`Chr5:4165509`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B75
`Chr5:4165614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B114,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764068.1

762 aa

381

762

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 156-233 aa PF00076 RRM_1 164-228 aa PF13893 RRM_5 246-320 aa PF00076 RRM_1 249-314 aa PF04059 RRM_2 608-704 aa

XP_057764069.1

762 aa

381

762

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 156-233 aa PF00076 RRM_1 164-228 aa PF13893 RRM_5 246-320 aa PF00076 RRM_1 249-314 aa PF04059 RRM_2 608-704 aa

XP_057764071.1

762 aa

381

762

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 156-233 aa PF00076 RRM_1 164-228 aa PF13893 RRM_5 246-320 aa PF00076 RRM_1 249-314 aa PF04059 RRM_2 608-704 aa

XP_057764072.1

762 aa

381

762

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 156-233 aa PF00076 RRM_1 164-228 aa PF13893 RRM_5 246-320 aa PF00076 RRM_1 249-314 aa PF04059 RRM_2 608-704 aa

XP_057764073.1

762 aa

381

762

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 156-233 aa PF00076 RRM_1 164-228 aa PF13893 RRM_5 246-320 aa PF00076 RRM_1 249-314 aa PF04059 RRM_2 608-704 aa

XP_057764074.1

731 aa

366

731

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 156-233 aa PF00076 RRM_1 164-228 aa PF13893 RRM_5 246-320 aa PF00076 RRM_1 249-314 aa PF04059 RRM_2 577-673 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764068.1`	Pfam	`PF13893`	RRM_5	Domain	156	233	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764068.1`	Pfam	`PF00076`	RRM_1	Domain	164	228	3.4e-27	94.8	RNA recognition motif
`XP_057764068.1`	Pfam	`PF13893`	RRM_5	Domain	246	320	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764068.1`	Pfam	`PF00076`	RRM_1	Domain	249	314	3.4e-27	94.8	RNA recognition motif
`XP_057764068.1`	Pfam	`PF04059`	RRM_2	Family	608	704	6.8e-54	180.8	RNA recognition motif 2
`XP_057764069.1`	Pfam	`PF13893`	RRM_5	Domain	156	233	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764069.1`	Pfam	`PF00076`	RRM_1	Domain	164	228	3.4e-27	94.8	RNA recognition motif
`XP_057764069.1`	Pfam	`PF13893`	RRM_5	Domain	246	320	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764069.1`	Pfam	`PF00076`	RRM_1	Domain	249	314	3.4e-27	94.8	RNA recognition motif
`XP_057764069.1`	Pfam	`PF04059`	RRM_2	Family	608	704	6.8e-54	180.8	RNA recognition motif 2
`XP_057764071.1`	Pfam	`PF13893`	RRM_5	Domain	156	233	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764071.1`	Pfam	`PF00076`	RRM_1	Domain	164	228	3.4e-27	94.8	RNA recognition motif
`XP_057764071.1`	Pfam	`PF13893`	RRM_5	Domain	246	320	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764071.1`	Pfam	`PF00076`	RRM_1	Domain	249	314	3.4e-27	94.8	RNA recognition motif
`XP_057764071.1`	Pfam	`PF04059`	RRM_2	Family	608	704	6.8e-54	180.8	RNA recognition motif 2
`XP_057764072.1`	Pfam	`PF13893`	RRM_5	Domain	156	233	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764072.1`	Pfam	`PF00076`	RRM_1	Domain	164	228	3.4e-27	94.8	RNA recognition motif
`XP_057764072.1`	Pfam	`PF13893`	RRM_5	Domain	246	320	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764072.1`	Pfam	`PF00076`	RRM_1	Domain	249	314	3.4e-27	94.8	RNA recognition motif
`XP_057764072.1`	Pfam	`PF04059`	RRM_2	Family	608	704	6.8e-54	180.8	RNA recognition motif 2
`XP_057764073.1`	Pfam	`PF13893`	RRM_5	Domain	156	233	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764073.1`	Pfam	`PF00076`	RRM_1	Domain	164	228	3.4e-27	94.8	RNA recognition motif
`XP_057764073.1`	Pfam	`PF13893`	RRM_5	Domain	246	320	1.7e-13	51.0	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764073.1`	Pfam	`PF00076`	RRM_1	Domain	249	314	3.4e-27	94.8	RNA recognition motif
`XP_057764073.1`	Pfam	`PF04059`	RRM_2	Family	608	704	6.8e-54	180.8	RNA recognition motif 2
`XP_057764074.1`	Pfam	`PF13893`	RRM_5	Domain	156	233	1.6e-13	51.2	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764074.1`	Pfam	`PF00076`	RRM_1	Domain	164	228	2.9e-27	95.1	RNA recognition motif
`XP_057764074.1`	Pfam	`PF13893`	RRM_5	Domain	246	320	1.6e-13	51.2	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057764074.1`	Pfam	`PF00076`	RRM_1	Domain	249	314	2.9e-27	95.1	RNA recognition motif
`XP_057764074.1`	Pfam	`PF04059`	RRM_2	Family	577	673	6.4e-54	180.9	RNA recognition motif 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057908089.1
TAATGTCGTTTTAATCCTAAGCAATATACATTATTATAATGTCTGCACACTCGTCCTCTTCGTCTTCCTCCCACAAAAGATTCTTGGAAACACATTAAATTGACTGAAATCAGTGGGTTTCTTGAACTTCTTATTCTTGAGACTTGAGGTGCTTAAAGATCTATCTAACGAGATGGGAACTAGTGCGTGGGAGCTCTTTCCCCGTTCTCATTCTTATCGCATGTCAAGTGATGCCTCGCTTTTCTCAACTTCATTGCCTG...

XM_057908091.1
CAATATACATTATTATAATGTCTGCACACTCGTCCTCTTCGTCTTCCTCCCACAAAAGATTCTTGGAAACACATTAAAGTATTATTTTATTGATTTGATTTTCCTTTTTAGTTTTTACTTTTGGATATTCTGTGTGCTTAAATGCACGTGGATATCAAATCAACATTTAAATGCAGTTGAATTCAATTTCAATCAAAAACAAAATCACCCCTCACTCTCTCAATAACTTCTCCTGTTTTTTTTTTTTTTTTCGCCATCAA...

CDS

6 records

下载 CDS FASTA

LOC130985240
ATGGGAACTAGTGCGTGGGAGCTCTTTCCCCGTTCTCATTCTTATCGCATGTCAAGTGATGCCTCGCTTTTCTCAACTTCATTGCCTGTTCTTGCCCACGCGGAGTTGAGTCACAATGAAGTGAAGAATGATCTTCAGTCCATGGATGATACCTCCAACAGCTTAAATGATATTGATCAGGAGCTAAAGGGTAATTGTGCTGTTGGAAGCTTGCTACCCGATGATGAGGATGAACTCCTAGCTGGGATAATGGAAAATTT...

Protein

6 records

下载 Protein FASTA

XP_057764068.1
MGTSAWELFPRSHSYRMSSDASLFSTSLPVLAHAELSHNEVKNDLQSMDDTSNSLNDIDQELKGNCAVGSLLPDDEDELLAGIMENFEASWLPNIVDDSEEYDLFGGGGLELESDPQENSRVGVSSLSLSDDGIGNSVAHLNQTNGVGTVAGEHPLGEHPSRTLFVRNINSNVEDAELRTLFELYGDIRTLYTACKHRGFVMVSYFDIRAARTAMRALQNKPLRRRKLDIHFSIPKENPSDKEINQGTLVVFNLDPSVTN...

XP_057764069.1
MGTSAWELFPRSHSYRMSSDASLFSTSLPVLAHAELSHNEVKNDLQSMDDTSNSLNDIDQELKGNCAVGSLLPDDEDELLAGIMENFEASWLPNIVDDSEEYDLFGGGGLELESDPQENSRVGVSSLSLSDDGIGNSVAHLNQTNGVGTVAGEHPLGEHPSRTLFVRNINSNVEDAELRTLFELYGDIRTLYTACKHRGFVMVSYFDIRAARTAMRALQNKPLRRRKLDIHFSIPKENPSDKEINQGTLVVFNLDPSVTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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