当前解析结果
SmilChr05G000547| 统一新 Gene ID | SmilChr05G000547 |
|---|---|
| 名称 | SmilChr05G000547 |
| 描述 | uncharacterized SmilChr05G000547 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4171539 - 4176278 / + |
| NCBI Gene ID | LOC130985247 |
|---|---|
| GeneID | 130985247 |
| locus_tag | - |
| NCBI Name | LOC130985247 |
| 原始查询 | SmilChr05G000547 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 16S rRNA processing protein RimM family [Source:NCBI gene (formerly Entrezgene);Acc:834685]; symbol=AT5G46420; hit=AT5G46420; species=arabidopsis; confidence=high |
| 产物 | 16S rRNA processing protein RimM family [Source:NCBI gene (formerly Entrezgene);Acc:834685]; symbol=AT5G46420; hit=AT5G46420; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G46420 (AT5G46420)16S rRNA processing protein RimM family [Source:NCBI gene (formerly Entrezgene);Acc:834685] identity=47.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0566300- identity=53.4; qcov=0.316; evalue=3.15e-70; confidence=low |
| GO | GO:0003977 (UDP-N-acetylglucosamine diphosphorylase activity); GO:0005840 (ribosome); GO:0006048 (UDP-N-acetylglucosamine biosynthetic process); GO:0006364 (rRNA processing); GO:0043022 (ribosome binding) |
| KEGG | - |
| Pfam | PF01782 (RimM); PF05239 (PRC); PF24986 (PRC_RimM) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985247 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057764084.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057764084.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057764084.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057764084.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057764084.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4171690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr5:4172410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B27,C76,D8 |
Chr5:4172425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,C43 |
Chr5:4172445 |
TG |
T |
1bp_deletion | frameshift_variant | 9 | A1,A11,B104,B139,C18,C21,C29,C72,D11 |
Chr5:4172451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,D4 |
Chr5:4172489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr5:4172497 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | C22 |
Chr5:4172497 |
C |
CG |
1bp_insertion | CDS_variant | 1 | C22 |
Chr5:4172781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr5:4172891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr5:4173697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr5:4173715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B38,B39,C12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764084.1PF01782
RimM 80-169 aa
PF05239
PRC 175-266 aa
PF24986
PRC_RimM 181-265 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764084.1 |
Pfam | PF01782 |
RimM | Domain | 80 | 169 | 2.2e-20 | 73.4 | RimM N-terminal domain |
XP_057764084.1 |
Pfam | PF05239 |
PRC | Domain | 175 | 266 | 5.1e-11 | 43.1 | PRC-barrel domain |
XP_057764084.1 |
Pfam | PF24986 |
PRC_RimM | Domain | 181 | 265 | 6.1e-12 | 45.7 | RimM PRC barrel domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。