当前解析结果
SmilChr05G000557| 统一新 Gene ID | SmilChr05G000557 |
|---|---|
| 名称 | SmilChr05G000557 |
| 描述 | uncharacterized protein At3g06530-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4195068 - 4196154 / + |
| NCBI Gene ID | LOC130985342 |
|---|---|
| GeneID | 130985342 |
| locus_tag | - |
| NCBI Name | LOC130985342 |
| 原始查询 | SmilChr05G000557 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819831]; symbol=AT3G06530; hit=AT3G06530; species=arabidopsis; confidence=low |
| 产物 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819831]; symbol=AT3G06530; hit=AT3G06530; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G06530 (AT3G06530)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819831] identity=52.4; qcov=0.636; evalue=8.7e-17; confidence=low |
| Rice | -- |
| GO | GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0030515 (snoRNA binding); GO:0030686 (90S preribosome); GO:0032040 (small-subunit processome); GO:0034455 (t-UTP complex); GO:0045943 (positive regulation of transcription by RNA polymerase I) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985342 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764262.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057764262.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057764262.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057764262.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764262.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4195635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr5:4195743 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B61,B76,C66,C74 |
Chr5:4195760 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B48,C28,C43,C56,C83 |
Chr5:4195760 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B48,C28,C43,C56,C83 |
Chr5:4196005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B47,B62,C14,C68 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。