Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000558`

染色体: Chr05 坐标: 4199581-4204860 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000558`
名称	SmilChr05G000558
描述	ABC transporter B family member 9-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4199581 - 4204860 / `+`

ID 对照

NCBI Gene ID	`LOC130985226`
GeneID	`130985226`
locus_tag	`-`
NCBI Name	`LOC130985226`
原始查询	`SmilChr05G000558`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter B family member 9-like
产物	ABC transporter B family member 9-like
Arabidopsis	`AT4G18050` (ABCB9) P-glycoprotein 9 [Source:NCBI gene (formerly Entrezgene);Acc:827530] identity=68.8; qcov=1; evalue=0; confidence=high
Rice	`Os01g0695700` (OsABCB4) - identity=60; qcov=0.997; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:130985226

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764045.1`
2	Nucleus	细胞核	0.00000	`XP_057764045.1`
3	Chromosome	染色体	0.00000	`XP_057764045.1`
4	Centromere	着丝粒	0.00000	`XP_057764045.1`
5	Chromatin	染色质	0.00000	`XP_057764045.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4199756`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,C31,C53,C83
`Chr5:4199797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B33
`Chr5:4199902`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:4199965`	`ATC`	`A`	2bp_deletion	frameshift_variant	12	A23,B131,B26,B45,B64,B77,C39,C40,C63,C84,C9,D2
`Chr5:4200595`	`A`	`AT`	1bp_insertion	frameshift_variant	23	A19,B11,B117,B120,B124,B125,B13,B135,B15,B21,B30,B37,B46,B69,B72,B90,B98,C26,C42,C45,C84,D3,D5
`Chr5:4200600`	`A`	`AC`	1bp_insertion	frameshift_variant	23	A19,B11,B117,B120,B124,B125,B13,B135,B15,B21,B30,B37,B46,B69,B72,B90,B98,C26,C42,C45,C84,D3,D5
`Chr5:4200601`	`T`	`TCG`	2bp_insertion	frameshift_variant	23	A19,B11,B117,B120,B124,B125,B13,B135,B15,B21,B30,B37,B46,B69,B72,B90,B98,C26,C42,C45,C84,D3,D5
`Chr5:4200607`	`G`	`GA`	1bp_insertion	frameshift_variant	23	A19,B11,B117,B120,B124,B125,B13,B135,B15,B21,B30,B37,B46,B69,B72,B90,B98,C26,C42,C45,C84,D3,D5
`Chr5:4201292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr5:4201465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr5:4201524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,C31,C63
`Chr5:4201722`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764045.1

1264 aa

632

1264

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 38-308 aa PF00005 ABC_tran 378-525 aa PF00664 ABC_membrane 699-970 aa PF00005 ABC_tran 1040-1189 aa

XP_057764047.1

1062 aa

531

1062

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 8-106 aa PF00005 ABC_tran 176-323 aa PF00664 ABC_membrane 497-768 aa PF00005 ABC_tran 838-987 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764045.1`	Pfam	`PF00664`	ABC_membrane	Family	38	308	1.2e-117	393.2	ABC transporter transmembrane region
`XP_057764045.1`	Pfam	`PF00005`	ABC_tran	Domain	378	525	6.6e-66	221.8	ABC transporter
`XP_057764045.1`	Pfam	`PF00664`	ABC_membrane	Family	699	970	1.2e-117	393.2	ABC transporter transmembrane region
`XP_057764045.1`	Pfam	`PF00005`	ABC_tran	Domain	1040	1189	6.6e-66	221.8	ABC transporter
`XP_057764047.1`	Pfam	`PF00664`	ABC_membrane	Family	8	106	4.9e-76	256.7	ABC transporter transmembrane region
`XP_057764047.1`	Pfam	`PF00005`	ABC_tran	Domain	176	323	4.4e-66	222.4	ABC transporter
`XP_057764047.1`	Pfam	`PF00664`	ABC_membrane	Family	497	768	4.9e-76	256.7	ABC transporter transmembrane region
`XP_057764047.1`	Pfam	`PF00005`	ABC_tran	Domain	838	987	4.4e-66	222.4	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908062.1
AAAAAAATTCACATGAACTTCTAGAAATATATAAGTTAGTACGTACACTATTAATCTCTCCAACAGATCCTTTATATATTTCATCACACTCGAGTTATTACACAATTCGTGTCTGAGATCACAATTCGAAAACTATTTCTCGCTTCCAAATTTTCAGAATCGCAGAATAGAGATGGCCAACGATCTGGCGGCGGCGACGACGCCATCTGAGAAGAAGGAGGAGGAGAAAGTGCCGTATTATAAACTGTTTTCTTTTGCAG...

XM_057908064.1
CGAATACGAGGGTTATACTTGAAAACTATATTAAGGCAGGATATCGAGTTCTTTGATACTCAAACATCAACGGGAGAGATCATTGGGAGAATGTCTGGTGATACGATCCTCATTCAAGATGCCATGGGCGAAAAAGAGGCTTTCTTATTGCTTTCTGTAGAGGATGGCTCCTAGCGATTGTGTTGTGTACGTGCATTCCTGCACTTTGTATAGCAGGAGCATTTTCAGCTGTACTCATGGGGAAGATGGCAACCCTCGGA...

CDS

2 records

下载 CDS FASTA

LOC130985226
ATGGCCAACGATCTGGCGGCGGCGACGACGCCATCTGAGAAGAAGGAGGAGGAGAAAGTGCCGTATTATAAACTGTTTTCTTTTGCAGACAAGCTTGATGTACTTCTAATGGTGGTCGGGGCAATCGCAGCCATCGGGAATGGGGTGTCGCAGCCGCTCATGACGCTTATTTTCGGCGAGTTGGTGGATTCCTTCGGCGGAGGTGATAAATCATCAATTGTGCATGCAGTTTCGAAGGTAGCGTTGAAATTGGTATACTT...

LOC130985226
ATGGGGAAGATGGCAACCCTCGGACAAGCTGCTTATGCCGAGGCTGGAAATGTAGTTGAACAAACAGTTGGAGCAATTAGGACGGTTCAATCCTACAATGGCGAGAAACAAGCAGTGGATAAGTATGACAGTAAACTGCAGATTGCTTATAAGGCTACTGCGAAACAAGGGCTAGCTTCGGGCACCGGATTTGGTTGCATGTTATTCGTTGTCTTTGCCACATATGGACTTGCAGTTTGGTATGGAGGCAAACTGATAAT...

Protein

2 records

下载 Protein FASTA

XP_057764045.1
MANDLAAATTPSEKKEEEKVPYYKLFSFADKLDVLLMVVGAIAAIGNGVSQPLMTLIFGELVDSFGGGDKSSIVHAVSKVALKLVYLGIGAGVASLLQMMCWMVTGERQAARIRGLYLKTILRQDIEFFDTQTSTGEIIGRMSGDTILIQDAMGEKVGKFIQFVSTFVGGFLIAFCRGWLLAIVLCTCIPALCIAGAFSAVLMGKMATLGQAAYAEAGNVVEQTVGAIRTVQSYNGEKQAVDKYDSKLQIAYKATAKQGL...

XP_057764047.1
MGKMATLGQAAYAEAGNVVEQTVGAIRTVQSYNGEKQAVDKYDSKLQIAYKATAKQGLASGTGFGCMLFVVFATYGLAVWYGGKLIITKGYSGGKVVNVIMSIMTGGIAIGQAFPCVSSFASGQAAAYKMFETINRKPKIDAGCSGIVLEDIKGEIELKDVYFRYPARPEVQIFRGFSIFIPSGKTAALVGQSGSGKSTVISLVERFYDPEAGEVLIDGVNLKQLKLKWIRGKIGLVSQEPILFATSMKDNILYGKEDAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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