Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000572`

染色体: Chr05 坐标: 4304539-4309517 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000572`
名称	SmilChr05G000572
描述	subtilisin-like protease SBT5.6
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4304539 - 4309517 / `-`

ID 对照

NCBI Gene ID	`LOC130985238`
GeneID	`130985238`
locus_tag	`-`
NCBI Name	`LOC130985238`
原始查询	`SmilChr05G000572`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	subtilisin-like protease SBT5.6
产物	subtilisin-like protease SBT5.6
Arabidopsis	`AT5G45650` (AT5G45650) subtilase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834605] identity=52.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os02g0198700` (OsSub12) - identity=43.5; qcov=1.05; evalue=0; confidence=medium
GO	GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis)
KEGG	-
Pfam	PF00082 (Peptidase_S8); PF05922 (Inhibitor_I9); PF17766 (fn3_6)
InterPro	-
eggNOG	-
NR	GeneID:130985238

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057764065.1`
2	Vacuole	液泡	0.40000	`XP_057764066.1`
3	Cell wall	细胞壁	0.20000	`XP_057764065.1`
4	Nucleus	细胞核	0.00000	`XP_057764065.1`
5	Chromosome	染色体	0.00000	`XP_057764065.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4304743`	`GTC`	`G`	2bp_deletion	frameshift_variant	16	A25,A8,B111,B18,B2,B23,B30,B40,B44,B64,B80,B83,B85,C36,C37,C76
`Chr5:4304830`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B19,B53,B57,C42,C54
`Chr5:4304884`	`TG`	`T`	1bp_deletion	frameshift_variant	4	A11,B108,B49,C72
`Chr5:4304884`	`TG`	`T`	1bp_deletion	CDS_variant	4	A11,B108,B49,C72
`Chr5:4304914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:4304954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,C16
`Chr5:4304963`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B108,B49
`Chr5:4304972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C42
`Chr5:4304981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:4305108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr5:4306315`	`G`	`GTT`	2bp_insertion	frameshift_variant	5	A20,B112,B35,B75,D11
`Chr5:4306315`	`G`	`GTT`	2bp_insertion	CDS_variant	5	A20,B112,B35,B75,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764065.1

768 aa

384

768

Inhibitor_I9

Peptidase_S8

fn3_6

PF05922 Inhibitor_I9 25-101 aa PF00082 Peptidase_S8 139-621 aa PF17766 fn3_6 670-764 aa

XP_057764066.1

753 aa

376

753

Inhibitor_I9

Peptidase_S8

fn3_6

PF05922 Inhibitor_I9 25-101 aa PF00082 Peptidase_S8 139-606 aa PF17766 fn3_6 655-749 aa

XP_057764067.1

752 aa

376

752

Inhibitor_I9

Peptidase_S8

fn3_6

PF05922 Inhibitor_I9 25-101 aa PF00082 Peptidase_S8 139-605 aa PF17766 fn3_6 654-748 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764065.1`	Pfam	`PF05922`	Inhibitor_I9	Domain	25	101	2.7e-17	63.9	Peptidase inhibitor I9
`XP_057764065.1`	Pfam	`PF00082`	Peptidase_S8	Domain	139	621	9.4e-43	147.3	Subtilase family
`XP_057764065.1`	Pfam	`PF17766`	fn3_6	Domain	670	764	2.4e-29	102.2	Fibronectin type-III domain
`XP_057764066.1`	Pfam	`PF05922`	Inhibitor_I9	Domain	25	101	2.5e-17	64.0	Peptidase inhibitor I9
`XP_057764066.1`	Pfam	`PF00082`	Peptidase_S8	Domain	139	606	3.3e-43	148.8	Subtilase family
`XP_057764066.1`	Pfam	`PF17766`	fn3_6	Domain	655	749	2.3e-29	102.2	Fibronectin type-III domain
`XP_057764067.1`	Pfam	`PF05922`	Inhibitor_I9	Domain	25	101	2.6e-17	64.0	Peptidase inhibitor I9
`XP_057764067.1`	Pfam	`PF00082`	Peptidase_S8	Domain	139	605	3.3e-43	148.8	Subtilase family
`XP_057764067.1`	Pfam	`PF17766`	fn3_6	Domain	654	748	2.3e-29	102.2	Fibronectin type-III domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057908084.1
GCTAGAAATCAGCTGCAGATAACAAGTAAGAGCAGCTGCAATTAATTCAATTCTTTGAGGAGAATGAATAATCAGTTGATAAGTCTTGCTGCATTTCTACTTCTCAATATCGTAGCTTCATCGGCTCAACGGCAGGTTTACATAGTATACCTGGGAGAGCACAACGGGCAGAAAACATTGCAAGAGATCAAAAACATTCATCACTCGTATTTGCATTCTGTCAAAGGCTCCAAAGAGGAGGCTGAATCCTGCCTAATTTA...

XM_057908083.1
GCTAGAAATCAGCTGCAGATAACAAGTAAGAGCAGCTGCAATTAATTCAATTCTTTGAGGAGAATGAATAATCAGTTGATAAGTCTTGCTGCATTTCTACTTCTCAATATCGTAGCTTCATCGGCTCAACGGCAGGTTTACATAGTATACCTGGGAGAGCACAACGGGCAGAAAACATTGCAAGAGATCAAAAACATTCATCACTCGTATTTGCATTCTGTCAAAGGCTCCAAAGAGGAGGCTGAATCCTGCCTAATTTA...

CDS

3 records

下载 CDS FASTA

LOC130985238
ATGAATAATCAGTTGATAAGTCTTGCTGCATTTCTACTTCTCAATATCGTAGCTTCATCGGCTCAACGGCAGGTTTACATAGTATACCTGGGAGAGCACAACGGGCAGAAAACATTGCAAGAGATCAAAAACATTCATCACTCGTATTTGCATTCTGTCAAAGGCTCCAAAGAGGAGGCTGAATCCTGCCTAATTTACAGCTATAAGAATGTCATCAATGGCTTCTCTGCCTTGCTCACCCCGCAAGAAGCTCACACAAT...

Protein

3 records

下载 Protein FASTA

XP_057764065.1
MNNQLISLAAFLLLNIVASSAQRQVYIVYLGEHNGQKTLQEIKNIHHSYLHSVKGSKEEAESCLIYSYKNVINGFSALLTPQEAHTISDMDGVISVFHSHPTKSRLHTTRSWDFISLLEANWDASKANGEELLSKASYGKNVIIGVLDSGVWPESESFNDEGMEPIPTSWNGICQTGVAFNSSHCNRKLVGARYYLKGYEAYFGPLDPTLDFRSPRDINGHGTHTASTIGGRRVPNAAAIGGVGNGTASGGAPLARLAIY...

XP_057764066.1
MNNQLISLAAFLLLNIVASSAQRQVYIVYLGEHNGQKTLQEIKNIHHSYLHSVKGSKEEAESCLIYSYKNVINGFSALLTPQEAHTISDMDGVISVFHSHPTKSRLHTTRSWDFISLLEANWDASKANGEELLSKASYGKNVIIGVLDSGVWPESESFNDEGMEPIPTSWNGICQTGVAFNSSHCNRKLVGARYYLKGYEAYFGPLDPTLDFRSPRDINGHGTHTASTIGGRRVPNAAAIGGVGNGTASGGAPLARLAIY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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