Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000598

染色体: Chr05 坐标: 4501605-4502836 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000598
名称SmilChr05G000598
描述oil body-associated protein 2A-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向4501605 - 4502836 / -

ID 对照

NCBI Gene IDLOC130985313
GeneID130985313
locus_tag-
NCBI NameLOC130985313
原始查询SmilChr05G000598

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述oil body-associated protein 2A-like
产物oil body-associated protein 2A-like
ArabidopsisAT5G45690 (AT5G45690)
histone acetyltransferase (DUF1264) [Source:NCBI gene (formerly Entrezgene);Acc:834608]
identity=59; qcov=1.01; evalue=6.12e-110; confidence=high
RiceOs01g0728700
-
identity=59.2; qcov=1.01; evalue=1.8e-112; confidence=high
GO-
KEGG-
PfamPF06884 (DUF1264)
InterPro-
eggNOG-
NRGeneID:130985313

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057764212.1
2 Cytoplasm 细胞质 0.80000 XP_057764212.1
3 Cytosol 细胞质基质 0.60000 XP_057764212.1
4 Nucleoplasm 核质 0.20000 XP_057764212.1
5 Chromosome 染色体 0.00000 XP_057764212.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:4501709 G A EMS_canonical_SNV CDS_variant 1 C50
Chr5:4501764 C T EMS_canonical_SNV CDS_variant 5 B75,B84,C10,C40,C75
Chr5:4501869 C T EMS_canonical_SNV CDS_variant 4 B122,C49,D4,D5
Chr5:4501918 G A EMS_canonical_SNV CDS_variant 1 C3
Chr5:4501925 C T EMS_canonical_SNV CDS_variant 1 B30
Chr5:4502172 TC T 1bp_deletion frameshift_variant 5 A23,B41,C48,C53,C75
Chr5:4502172 TC T 1bp_deletion CDS_variant 5 A23,B41,C48,C53,C75
Chr5:4502174 CCA C 2bp_deletion frameshift_variant 1 C26
Chr5:4502174 CCA C 2bp_deletion CDS_variant 1 C26
Chr5:4502175 C CA 1bp_insertion frameshift_variant 57 A10,A16,A20,A23,A24,A7,B10,B104,B128,B138,B139,B14,B2,B32,B36,B38,B39,B41,B46,B47,B59,B61,B66,B69,B70,B71,B73,B76,B82,B88,B89,C13,C14,C15,C16,C18,C2,C33,C34,C48,C51,C52,C53,C57,C60,C66,C69,C72,C75,C76,C77,C8,C81,C83,C85,D3,D7
Chr5:4502191 G A EMS_canonical_SNV CDS_variant 1 A14
Chr5:4502257 C T EMS_canonical_SNV CDS_variant 1 B27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764212.1
270 aa
N
1
135
270
DUF1264
DUF1264
C
PF06884 DUF1264 41-124 aa PF06884 DUF1264 145-231 aa
XP_057764213.1
247 aa
N
1
124
247
DUF1264
C
PF06884 DUF1264 41-208 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764212.1 Pfam PF06884 DUF1264 Family 41 124 1e-61 208.2 Protein of unknown function (DUF1264)
XP_057764212.1 Pfam PF06884 DUF1264 Family 145 231 1e-61 208.2 Protein of unknown function (DUF1264)
XP_057764213.1 Pfam PF06884 DUF1264 Family 41 208 1.3e-67 227.4 Protein of unknown function (DUF1264)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057908230.1
GACTCATAGCTTACAAACGAGGCGCGGAAAATTTCAAGCGATTTCTGCCACCTCGATCTTCATCCATGGATACGTGGAGACTACACAAGAATCCACCACCGCTGAAAGCGTGAGTATATATATCTCATCTACTCGATCGGAAAATTCGAAGAAATTCACTCAAATTTAGCTCTAATTAAATGGCTTCAACCGACCAAACGCCGGGCGCGATGCCGCCGGGAGACGGCGCAGTGCCGCCGGGAAAGGCCATGACGGTGGGG...
XM_057908229.1
AATTTCAAGCGATTTCTGCCACCTCGATCTTCATCCATGGATACGTGGAGACTACACAAGAATCCACCACCGCTGAAAGCGTGAGTATATATATCTCATCTACTCGATCGGAAAATTCGAAGAAATTCACTCAAATTTAGCTCTAATTAAATGGCTTCAACCGACCAAACGCCGGGCGCGATGCCGCCGGGAGACGGCGCAGTGCCGCCGGGAAAGGCCATGACGGTGGGGCAGCAGATGCTGGACAAGGGAGCGGAGAT...

CDS

2 records

下载 CDS FASTA
LOC130985313
ATGGCTTCAACCGACCAAACGCCGGGCGCGATGCCGCCGGGAGACGGCGCAGTGCCGCCGGGAAAGGCCATGACGGTGGGGCAGCAGATGCTGGACAAGGGAGCGGAGATGATGCAGTCGTTTCAACCGATTAAAAAAATGAGCCAGCACGCCTGTTCCTTCGCCATCTACAGCCACGATCTCACCCGCCAGATCCAGACGCATCACTACATAAGCCGCCTCAATCAGGACTTCCTTCAGTGCGCCGTCTACGACTCCGA...
LOC130985313
ATGGCTTCAACCGACCAAACGCCGGGCGCGATGCCGCCGGGAGACGGCGCAGTGCCGCCGGGAAAGGCCATGACGGTGGGGCAGCAGATGCTGGACAAGGGAGCGGAGATGATGCAGTCGTTTCAACCGATTAAAAAAATGAGCCAGCACGCCTGTTCCTTCGCCATCTACAGCCACGATCTCACCCGCCAGATCCAGACGCATCACTACATAAGCCGCCTCAATCAGGACTTCCTTCAGTGCGCCGTCTACGACTCCGA...

Protein

2 records

下载 Protein FASTA
XP_057764212.1
MASTDQTPGAMPPGDGAVPPGKAMTVGQQMLDKGAEMMQSFQPIKKMSQHACSFAIYSHDLTRQIQTHHYISRLNQDFLQCAVYDSDDSAARLIGVEYIVSKRVFDTLQPEEQKLWHSHFYEVAFVDEIFCDEHFFGIIDPILVQITSGAWVNPRVPELVQKSELEELAQSYGKFWCTWQVDRGDRLPLGAPALMVSPQGVNMAMVKEELIKKRDEKYKVSSSELGRKRANFAIPEAEAVNPYADYWMQTGKGFAIDVQQ...
XP_057764213.1
MASTDQTPGAMPPGDGAVPPGKAMTVGQQMLDKGAEMMQSFQPIKKMSQHACSFAIYSHDLTRQIQTHHYISRLNQDFLQCAVYDSDDSAARLIGVEYIVSKRVFDTLQPEEQKLWHSHFYEITSGAWVNPRVPELVQKSELEELAQSYGKFWCTWQVDRGDRLPLGAPALMVSPQGVNMAMVKEELIKKRDEKYKVSSSELGRKRANFAIPEAEAVNPYADYWMQTGKGFAIDVQQTEIKSRAPFP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器