当前解析结果
SmilChr05G000608| 统一新 Gene ID | SmilChr05G000608 |
|---|---|
| 名称 | SmilChr05G000608 |
| 描述 | U-box domain-containing protein 17-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4576741 - 4579389 / - |
| NCBI Gene ID | LOC130985242 |
|---|---|
| GeneID | 130985242 |
| locus_tag | - |
| NCBI Name | LOC130985242 |
| 原始查询 | SmilChr05G000608 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 17-like |
| 产物 | U-box domain-containing protein 17-like |
| Arabidopsis | AT1G29340 (PUB17)plant U-box 17 [Source:NCBI gene (formerly Entrezgene);Acc:839808] identity=64.5; qcov=1.04; evalue=0; confidence=high |
| Rice | Os02g0234300 (OsPUB4)- identity=46.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination) |
| KEGG | - |
| Pfam | PF00514 (Arm); PF04564 (U-box); PF25368 (PUB10_N); PF25598 (ARM_PUB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985242 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057764077.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057764077.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057764077.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057764077.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764077.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4576862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B127,B34,C20,C6,C73 |
Chr5:4576958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B100,B136,B24,B68 |
Chr5:4577003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr5:4577105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr5:4577182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B74,B90,B92,C12 |
Chr5:4577240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr5:4577248 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,B34 |
Chr5:4577261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr5:4577273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr5:4577312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,C2 |
Chr5:4577380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr5:4577413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764077.1PF25368
PUB10_N 60-166 aa
PF04564
U-box 290-360 aa
PF25598
ARM_PUB 413-675 aa
PF00514
Arm 425-462 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764077.1 |
Pfam | PF25368 |
PUB10_N | Domain | 60 | 166 | 2.5e-10 | 41.7 | PUB10-like, N-terminal domain |
XP_057764077.1 |
Pfam | PF04564 |
U-box | Domain | 290 | 360 | 1.8e-20 | 73.6 | U-box domain |
XP_057764077.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 413 | 675 | 3.4e-17 | 63.5 | Plant U-box protein ARM repeat region |
XP_057764077.1 |
Pfam | PF00514 |
Arm | Repeat | 425 | 462 | 3.8e-16 | 59.2 | Armadillo/beta-catenin-like repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。