Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000623`

染色体: Chr05 坐标: 4706279-4715947 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000623`
名称	SmilChr05G000623
描述	cellulose synthase A catalytic subunit 8 [UDP-forming]
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4706279 - 4715947 / `+`

ID 对照

NCBI Gene ID	`LOC131024811`
GeneID	`131024811`
locus_tag	`-`
NCBI Name	`LOC131024811`
原始查询	`SmilChr05G000623`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cellulose synthase A catalytic subunit 8 [UDP-forming]
产物	cellulose synthase A catalytic subunit 8 [UDP-forming]
Arabidopsis	`AT4G18780` (IRX1) cellulose synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827612] identity=78.6; qcov=0.724; evalue=0; confidence=high
Rice	`Os01g0750300` (OsCesA4) - identity=75; qcov=0.733; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0009833 (plant-type primary cell wall biogenesis); GO:0016760 (cellulose synthase (UDP-forming) activity); GO:0030244 (cellulose biosynthetic process)
KEGG	-
Pfam	PF00400 (WD40); PF03552 (Cellulose_synt); PF13632 (Glyco_trans_2_3); PF14569 (zf-UDP); PF23098 (Beta-prop_NOL10_N)
InterPro	-
eggNOG	-
NR	GeneID:131024811

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057810330.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057810330.1`
3	Nucleus	细胞核	0.00000	`XP_057810330.1`
4	Chromosome	染色体	0.00000	`XP_057810330.1`
5	Centromere	着丝粒	0.00000	`XP_057810330.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4709199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr5:4709236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:4710142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr5:4710351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B16,B57,C80
`Chr5:4710570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:4710576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B128,B34,B59,C76
`Chr5:4711952`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	A24,B74,C50
`Chr5:4711952`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B74,C50
`Chr5:4711969`	`C`	`T`	EMS_canonical_SNV	stop_gained	15	A6,B107,B111,B122,B127,B29,B34,B53,B59,C18,C19,C40,C51,C76,C83
`Chr5:4711977`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	C50
`Chr5:4711977`	`GCC`	`G`	2bp_deletion	CDS_variant	1	C50
`Chr5:4711979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810330.1

1369 aa

684

1369

WD40

Beta-prop_NOL10_N

WD40

zf-UDP

Cellulose_synt

Glyco_trans_2_3

PF00400 WD40 5-40 aa PF23098 Beta-prop_NOL10_N 27-125 aa PF00400 WD40 137-172 aa PF00400 WD40 273-309 aa PF14569 zf-UDP 397-453 aa PF03552 Cellulose_synt 642-1359 aa PF13632 Glyco_trans_2_3 1056-1159 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810330.1`	Pfam	`PF00400`	WD40	Repeat	5	40	6.7e-17	61.9	WD domain, G-beta repeat
`XP_057810330.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	27	125	7.8e-08	32.6	Nucleolar protein 10-like, N-terminal domain
`XP_057810330.1`	Pfam	`PF00400`	WD40	Repeat	137	172	6.7e-17	61.9	WD domain, G-beta repeat
`XP_057810330.1`	Pfam	`PF00400`	WD40	Repeat	273	309	6.7e-17	61.9	WD domain, G-beta repeat
`XP_057810330.1`	Pfam	`PF14569`	zf-UDP	Domain	397	453	4.7e-17	62.5	Zinc-binding RING-finger
`XP_057810330.1`	Pfam	`PF03552`	Cellulose_synt	Domain	642	1359	0	1327.0	Cellulose synthase
`XP_057810330.1`	Pfam	`PF13632`	Glyco_trans_2_3	Domain	1056	1159	3.5e-06	27.7	Glycosyl transferase family group 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954347.1
TAATTACTTTTAAATGAATTTTTAATTTGCATGATTATATCAATTGAGCGATTTAGCAACTGAAATGTGTTTGGTGGTCAGCGTTAGGTTTTATTGTTTTATCATACAGTCGCTATTGGAAAGACGAATTACGTTTAGGAATTTAGCAAACTACTTATATTATTCATAATTTATAGAGCGCGAATTCCTCATTGCGCCGCCGATATGACGGAGCCGAGGCGATTAAAAGGGCACAGCGCCGCCGCCACTTGTTGCATCGC...

CDS

1 records

下载 CDS FASTA

LOC131024811
ATGACGGAGCCGAGGCGATTAAAAGGGCACAGCGCCGCCGCCACTTGTTGCATCGCTTCCCGAGTCCGACCAGGCTTCATCGCCACAGCCGCCGAGGATGGTCGCGTTTGCTTGTATGATTTGCGGTGCAAAGATATTCTGTTCTCTATGGATGTGGGGGATGGGAACCCTGTTTCATCTTTATGTTTTAAGCCAGGGAATGAAGAGATCATCTATGTTTCTGTAGAAAACGAAATCAAGTGCTTTGATTTACATGTGAC...

Protein

1 records

下载 Protein FASTA

XP_057810330.1
MTEPRRLKGHSAAATCCIASRVRPGFIATAAEDGRVCLYDLRCKDILFSMDVGDGNPVSSLCFKPGNEEIIYVSVENEIKCFDLHVTTSCKQLESYNYNKDEINQIACHPKSSFLAAADDAGDVKIVDVHQRCLYKTLRAGHQSICSSVQFLPWRSWEVITGGLDSKLALWDFSRGRPNKIMDFGSGGNAGQCYNPAFVHALVVPDLDFVDSVGKICVVARGDGVVNVINLEPELTSQKSKNSSKSKMGTKSLPKGNPPT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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