Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000635`

染色体: Chr05 坐标: 4781932-4786878 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000635`
名称	SmilChr05G000635
描述	protein MALE DISCOVERER 2-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	4781932 - 4786878 / `-`

ID 对照

NCBI Gene ID	`LOC130985243`
GeneID	`130985243`
locus_tag	`-`
NCBI Name	`LOC130985243`
原始查询	`SmilChr05G000635`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein MALE DISCOVERER 2-like
产物	protein MALE DISCOVERER 2-like
Arabidopsis	`AT5G45840` (AT5G45840) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834624] identity=48.4; qcov=1.03; evalue=0; confidence=high
Rice	`Os01g0206800` - identity=47; qcov=0.981; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130985243

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057764078.1`
2	Nucleus	细胞核	0.00000	`XP_057764078.1`
3	Chromosome	染色体	0.00000	`XP_057764078.1`
4	Centromere	着丝粒	0.00000	`XP_057764078.1`
5	Chromatin	染色质	0.00000	`XP_057764078.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:4782227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:4782714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr5:4782817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr5:4782938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B14,C47
`Chr5:4782944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,B36
`Chr5:4783785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B124,B30,B86,C54,D8
`Chr5:4783825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:4783901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C26
`Chr5:4784152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:4784327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C80,C85
`Chr5:4785169`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B91
`Chr5:4785204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B88,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764078.1

702 aa

351

702

LRRNT_2

LRR_14

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF08263 LRRNT_2 35-75 aa PF23598 LRR_14 83-184 aa PF00560 LRR_1 103-125 aa PF00560 LRR_1 127-149 aa PF07714 PK_Tyr_Ser-Thr 437-670 aa PF00069 Pkinase 446-669 aa

XP_057764079.1

700 aa

350

700

LRRNT_2

LRR_14

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF08263 LRRNT_2 35-75 aa PF23598 LRR_14 83-184 aa PF00560 LRR_1 103-125 aa PF00560 LRR_1 127-149 aa PF07714 PK_Tyr_Ser-Thr 435-668 aa PF00069 Pkinase 444-667 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764078.1`	Pfam	`PF08263`	LRRNT_2	Family	35	75	1.7e-12	48.1	Leucine rich repeat N-terminal domain
`XP_057764078.1`	Pfam	`PF23598`	LRR_14	Repeat	83	184	1.7e-13	50.8	Leucine-rich repeat region
`XP_057764078.1`	Pfam	`PF00560`	LRR_1	Repeat	103	125	2.7e-10	39.0	Leucine Rich Repeat
`XP_057764078.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	2.7e-10	39.0	Leucine Rich Repeat
`XP_057764078.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	437	670	6.2e-19	69.0	Protein tyrosine and serine/threonine kinase
`XP_057764078.1`	Pfam	`PF00069`	Pkinase	Domain	446	669	3e-12	47.2	Protein kinase domain
`XP_057764079.1`	Pfam	`PF08263`	LRRNT_2	Family	35	75	1.7e-12	48.1	Leucine rich repeat N-terminal domain
`XP_057764079.1`	Pfam	`PF23598`	LRR_14	Repeat	83	184	1.7e-13	50.8	Leucine-rich repeat region
`XP_057764079.1`	Pfam	`PF00560`	LRR_1	Repeat	103	125	2.6e-10	39.0	Leucine Rich Repeat
`XP_057764079.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	2.6e-10	39.0	Leucine Rich Repeat
`XP_057764079.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	435	668	6.2e-19	69.0	Protein tyrosine and serine/threonine kinase
`XP_057764079.1`	Pfam	`PF00069`	Pkinase	Domain	444	667	3e-12	47.2	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908096.1
GGGTTGAGACCGGTGGTGATGGGACTAACTTCTTTTTTTAGAGTGAGAAAACAAGAGAGAGAGAATCTTTTCTCCATTTCCCCCCTCTTTCTGAAAGATGGTCGAGGAGAGTTTTCACCTCTGAGATCATCCTGGAAAGGGCACTCAACCAAATCCCATGCCACATTCTTCTCTGTGTTGCATCAACATTGTAATTATCCAATTTTCCAATCCATATTCTTCCATCAGCTCACAATTTTGAGTGTCCAACCGCAATTTCC...

XM_057908095.1
GTTGAGACCGGTGGTGATGGGACTAACTTCTTTTTTTAGAGTGAGAAAACAAGAGAGAGAGAATCTTTTCTCCATTTCCCCCCTCTTTCTGAAAGATGGTCGAGGAGAGTTTTCACCTCTGAGATCATCCTGGAAAGGGCACTCAACCAAATCCCATGCCACATTCTTCTCTGTGTTGCATCAACATTGTAATTATCCAATTTTCCAATCCATATTCTTCCATCAGCTCACAATTTTGAGTGTCCAACCGCAATTTCCCC...

CDS

2 records

下载 CDS FASTA

LOC130985243
ATGGTTCTGCGAGCAATGGCTGGTAGATGGACTACTTGTGGGATGCAACTCTTTTGTTCCGTGCTTTTAATTATTGCCTTGGAAATTCGTGGTTGTTTGTCCCTCAATTCGGAAGGGTTGGCGTTGTTTCAATTCAGAGCAAAGTTGGAGTTCGACCCTTTTGGTGCTTTAGCAAATTGGAATCCTGATGACTCTGATCCGTGCATGTGGTCAGGGATTGAATGTGTGGATGGTAATGTGGTCTTGCTAGATCTCAATGG...

Protein

2 records

下载 Protein FASTA

XP_057764078.1
MVLRAMAGRWTTCGMQLFCSVLLIIALEIRGCLSLNSEGLALFQFRAKLEFDPFGALANWNPDDSDPCMWSGIECVDGNVVLLDLNGHDLEGELAPELGNLSHLRFLDLSKNYLSGNIPRGFGQLTSLEVLDLRDNNLSGPLPTELGKLRSLKRLLLCNNRFEGSMPVEIEKLSLLTDLQLDGIFTTADAAGIGCTNRKFGHCILQSASKQPKKSARTPTKRSIPHYLNLLPQFSFGSELSQNHADDSYNNLTDPPEQRF...

XP_057764079.1
MVLRAMAGRWTTCGMQLFCSVLLIIALEIRGCLSLNSEGLALFQFRAKLEFDPFGALANWNPDDSDPCMWSGIECVDGNVVLLDLNGHDLEGELAPELGNLSHLRFLDLSKNYLSGNIPRGFGQLTSLEVLDLRDNNLSGPLPTELGKLRSLKRLLLCNNRFEGSMPVEIEKLSLLTDLQLDGIFTTADAAGIGCTNRKFGHCILQSASKQPKKSARTPTKRSIPHYLNLLPHFGSELSQNHADDSYNNLTDPPEQRFIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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