当前解析结果
SmilChr05G000640| 统一新 Gene ID | SmilChr05G000640 |
|---|---|
| 名称 | SmilChr05G000640 |
| 描述 | uncharacterized SmilChr05G000640 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 4849301 - 4850342 / + |
| NCBI Gene ID | LOC130985355 |
|---|---|
| GeneID | 130985355 |
| locus_tag | - |
| NCBI Name | LOC130985355 |
| 原始查询 | SmilChr05G000640 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphatidylinositol 4-phosphate 5-kinase MSS4-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839794]; symbol=AT1G29195; hit=AT1G29195; species=arabidopsis; confidence=high |
| 产物 | phosphatidylinositol 4-phosphate 5-kinase MSS4-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839794]; symbol=AT1G29195; hit=AT1G29195; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G29195 (AT1G29195)phosphatidylinositol 4-phosphate 5-kinase MSS4-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839794] identity=54; qcov=1.15; evalue=1.87e-60; confidence=high |
| Rice | Os01g0758500 (B1131G08.18-1)- identity=47.6; qcov=1.17; evalue=1.22e-48; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF14009 (PADRE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985355 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764273.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057764273.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057764273.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057764273.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057764273.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:4849791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr5:4849813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr5:4849885 |
A |
AGG |
2bp_insertion | frameshift_variant | 63 | A11,A15,A20,A21,A6,A7,B106,B121,B122,B126,B127,B129,B130,B140,B15,B17,B18,B19,B21,B22,B28,B29,B30,B35,B39,B4,B40,B41,B43,B5,B51,B57,B63,B64,B7,B72,B75,B78,B8,B85,C1,C10,C12,C13,C16,C18,C2,C31,C35,C37,C39,C40,C41,C44,C47,C61,C67,C68,C74,C8,C82,C84,D4 |
Chr5:4849966 |
A |
AT |
1bp_insertion | frameshift_variant | 37 | A11,A15,A16,A21,A7,B122,B129,B130,B17,B19,B22,B28,B30,B39,B4,B43,B51,B57,B63,B64,B75,B78,B8,B80,B85,C10,C13,C39,C41,C47,C48,C61,C67,C68,C74,C87,D4 |
Chr5:4849985 |
A |
AGG |
2bp_insertion | frameshift_variant | 8 | A7,B28,B40,B80,C13,C41,C48,C87 |
Chr5:4850020 |
A |
ACG |
2bp_insertion | frameshift_variant | 1 | A7 |
Chr5:4850020 |
A |
ACG |
2bp_insertion | CDS_variant | 1 | A7 |
Chr5:4850022 |
C |
CGG |
2bp_insertion | frameshift_variant | 1 | A7 |
Chr5:4850022 |
C |
CGG |
2bp_insertion | CDS_variant | 1 | A7 |
Chr5:4850029 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | A7 |
Chr5:4850029 |
A |
AG |
1bp_insertion | CDS_variant | 1 | A7 |
Chr5:4850047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764273.1PF14009
PADRE 7-159 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764273.1 |
Pfam | PF14009 |
PADRE | Domain | 7 | 159 | 1.6e-36 | 127.2 | PADRE domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。