Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000661

染色体: Chr05 坐标: 4982797-4992411 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000661
名称SmilChr05G000661
描述short-chain dehydrogenase reductase 3a-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向4982797 - 4992411 / +

ID 对照

NCBI Gene IDLOC130985373
GeneID130985373
locus_tag-
NCBI NameLOC130985373
原始查询SmilChr05G000661

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述short-chain dehydrogenase reductase 3a-like
产物short-chain dehydrogenase reductase 3a-like
ArabidopsisAT4G03140 (AT4G03140)
NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828065]
identity=68.8; qcov=0.908; evalue=6.15e-132; confidence=high
RiceOs07g0664400
-
identity=55.2; qcov=0.891; evalue=1.79e-100; confidence=high
GOGO:0016491 (oxidoreductase activity)
KEGG-
PfamPF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2)
InterPro-
eggNOG-
NRGeneID:130985373

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057764300.1
2 Mitochondrion matrix 线粒体基质 1.00000 XP_057764300.1
3 Nucleus 细胞核 0.00000 XP_057764300.1
4 Chromosome 染色体 0.00000 XP_057764300.1
5 Centromere 着丝粒 0.00000 XP_057764300.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:4984549 C T EMS_canonical_SNV CDS_variant 1 A6
Chr5:4985117 G A EMS_canonical_SNV CDS_variant 4 A25,B103,C17,C32
Chr5:4985126 G A EMS_canonical_SNV CDS_variant 2 C34,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764300.1
308 aa
N
1
154
308
adh_short
KR
adh_short_C2
C
PF00106 adh_short 47-235 aa PF08659 KR 49-199 aa PF13561 adh_short_C2 53-295 aa
XP_057764302.1
302 aa
N
1
151
302
adh_short
KR
adh_short_C2
C
PF00106 adh_short 41-229 aa PF08659 KR 43-193 aa PF13561 adh_short_C2 47-289 aa
XP_057764303.1
302 aa
N
1
151
302
adh_short
KR
adh_short_C2
C
PF00106 adh_short 41-229 aa PF08659 KR 43-193 aa PF13561 adh_short_C2 47-289 aa
XP_057764304.1
295 aa
N
1
148
295
adh_short
KR
adh_short_C2
C
PF00106 adh_short 34-222 aa PF08659 KR 36-186 aa PF13561 adh_short_C2 40-282 aa
XP_057764305.1
295 aa
N
1
148
295
adh_short
KR
adh_short_C2
C
PF00106 adh_short 34-222 aa PF08659 KR 36-186 aa PF13561 adh_short_C2 40-282 aa
XP_057764306.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764307.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764308.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764309.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764310.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764311.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764312.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764313.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764314.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764300.1 Pfam PF00106 adh_short Domain 47 235 2.4e-51 174.7 short chain dehydrogenase
XP_057764300.1 Pfam PF08659 KR Family 49 199 7.2e-10 39.8 KR domain
XP_057764300.1 Pfam PF13561 adh_short_C2 Domain 53 295 1.9e-61 208.4 Enoyl-(Acyl carrier protein) reductase
XP_057764302.1 Pfam PF00106 adh_short Domain 41 229 2.2e-51 174.8 short chain dehydrogenase
XP_057764302.1 Pfam PF08659 KR Family 43 193 6.8e-10 39.9 KR domain
XP_057764302.1 Pfam PF13561 adh_short_C2 Domain 47 289 1.8e-61 208.5 Enoyl-(Acyl carrier protein) reductase
XP_057764303.1 Pfam PF00106 adh_short Domain 41 229 2.2e-51 174.8 short chain dehydrogenase
XP_057764303.1 Pfam PF08659 KR Family 43 193 6.8e-10 39.9 KR domain
XP_057764303.1 Pfam PF13561 adh_short_C2 Domain 47 289 1.8e-61 208.5 Enoyl-(Acyl carrier protein) reductase
XP_057764304.1 Pfam PF00106 adh_short Domain 34 222 2.1e-51 174.9 short chain dehydrogenase
XP_057764304.1 Pfam PF08659 KR Family 36 186 6.2e-10 40.0 KR domain
XP_057764304.1 Pfam PF13561 adh_short_C2 Domain 40 282 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764305.1 Pfam PF00106 adh_short Domain 34 222 2.1e-51 174.9 short chain dehydrogenase
XP_057764305.1 Pfam PF08659 KR Family 36 186 6.2e-10 40.0 KR domain
XP_057764305.1 Pfam PF13561 adh_short_C2 Domain 40 282 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764306.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764306.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764306.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764307.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764307.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764307.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764308.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764308.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764308.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764309.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764309.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764309.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764310.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764310.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764310.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764311.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764311.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764311.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764312.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764312.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764312.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764313.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764313.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764313.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764314.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764314.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764314.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

14 records

下载 cDNA FASTA
XM_057908319.1
ACCAATGCACATGTATCATGTCGGCCACCATCGACCACTTTATACCATGCCCTTTATCCCCATACCTCTATCAATTGATAAGTTTTCTCTCGCCCACAAGAATTTCATCAGCTGGGATCGTCCATCAAATTAACAACAGCGGGATCTTTTCATAAGAGGCTTTGTGGTCCAAGGGGATTAGCGCTGCTTTCCCAAGACATGTTTATATGTGAATGATCTTCAGGTTTTGCCTATCTAGAATGTTGAGAACTCCATTCAGA...
XM_057908321.1
ACCAATGCACATGTATCATGTCGGCCACCATCGACCACTTTATACCATGCCCTTTATCCCCATACCTCTATCAATTGATAAGTTTTCTCTCGCCCACAAGAATTTCATCAGCTGGGATCGTCCATCAAATTAACAACAGCGGGATCTTTTCATAAGAGGCTTTGTGGTCCAAGGGGATTAGCGCTGCTTTCCCAAGACATGTTTATATGTGAATGATCTTCAGGTTTTGCCTATCTAGAAAGTTGTCCGGTGCAAGAGTT...

CDS

14 records

下载 CDS FASTA
LOC130985373
ATGATCTTCAGGTTTTGCCTATCTAGAATGTTGAGAACTCCATTCAGAAAGTTGTCCGGTGCAAGAGTTTTGCTGACTCGGAGATGGCTTTCTCAAGACACAACAAGCAAACTGGAAGGCAAGGTAGCTCTAATTACAGGGGCAGCAAGTGGTATAGGCAAAGAAACAGCAACCAAATTCATCAACAATGGTGCCAAAGTAGTGCTAGCCGACATCCAGAAAGATGAGGGCCACCACACGACCCTGGAGCTCGGTCAGAA...
LOC130985373
ATGATCTTCAGGTTTTGCCTATCTAGAATGTTGAGAACTCCATTCAGAAAGTTGTCCGGTGCAAGAGTTTTGCTGACTCGGAGATGGCTTTCTCAAGACACAACAAGCAAACTGGAAGGCAAGGTAGCTCTAATTACAGGGGCAGCAAGTGGTATAGGCAAAGAAACAGCAACCAAATTCATCAACAATGGTGCCAAAGTAGTGCTAGCCGACATCCAGAAAGATGAGGGCCACCACACGACCCTGGAGCTCGGTCAGAA...

Protein

14 records

下载 Protein FASTA
XP_057764300.1
MFSGWLASADGTELRMLRTPFRKLSGARVLLTRRWLSQDTTSKLEGKVALITGAASGIGKETATKFINNGAKVVLADIQKDEGHHTTLELGQNAAFVACDVTKESDVSDAVDFTVSKFGHLDIMYNNAGIACHTPPSIVDLDLASFDRVMAINVRGVVSGIKHGARVMIPRERGVILCTASVTGLMGGLAQHTYSVSKSGVIGIVRSVASELCRHGIRVNCISPMAIPTPFVMDEIKKYYPEVDPHRLVKMVHDFSVLKG...
XP_057764302.1
MIFRFCLSRMLRTPFRKLSGARVLLTRRWLSQDTTSKLEGKVALITGAASGIGKETATKFINNGAKVVLADIQKDEGHHTTLELGQNAAFVACDVTKESDVSDAVDFTVSKFGHLDIMYNNAGIACHTPPSIVDLDLASFDRVMAINVRGVVSGIKHGARVMIPRERGVILCTASVTGLMGGLAQHTYSVSKSGVIGIVRSVASELCRHGIRVNCISPMAIPTPFVMDEIKKYYPEVDPHRLVKMVHDFSVLKGAVCEPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器