Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000682`

染色体: Chr05 坐标: 5186139-5191450 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000682`
名称	SmilChr05G000682
描述	negative regulator of systemic acquired resistance SNI1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5186139 - 5191450 / `+`

ID 对照

NCBI Gene ID	`LOC130985392`
GeneID	`130985392`
locus_tag	`-`
NCBI Name	`LOC130985392`
原始查询	`SmilChr05G000682`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	negative regulator of systemic acquired resistance SNI1
产物	negative regulator of systemic acquired resistance SNI1
Arabidopsis	`AT4G18470` (SNI1) negative regulator of systemic acquired resistance (SNI1) [Source:NCBI gene (formerly Entrezgene);Acc:827577] identity=41.6; qcov=0.989; evalue=2.09e-100; confidence=medium
Rice	`Os02g0312800` (OsSNI1) - identity=37.5; qcov=0.983; evalue=4.16e-97; confidence=medium
GO	GO:0000976 (transcription cis-regulatory region binding); GO:0005634 (nucleus); GO:0006974 (DNA damage response); GO:0010113 (negative regulation of systemic acquired resistance); GO:0016570 (GO:0016570); GO:0030915 (Smc5-Smc6 complex); GO:0045892 (negative regulation of DNA-templated transcription)
KEGG	-
Pfam	PF28645 (SNI1_middle); PF28650 (SNI1_C)
InterPro	-
eggNOG	-
NR	GeneID:130985392

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764333.1`
2	Nucleus membrane	核膜	0.40000	`XP_057764333.1`
3	Chromosome	染色体	0.00000	`XP_057764333.1`
4	Centromere	着丝粒	0.00000	`XP_057764333.1`
5	Chromatin	染色质	0.00000	`XP_057764333.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5186587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B95,C20,C35,C81
`Chr5:5187165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr5:5187183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,D10
`Chr5:5187216`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C38,D1,D7
`Chr5:5188273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,A4,B68,D4
`Chr5:5188286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:5188287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr5:5190092`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D1,D7
`Chr5:5190113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:5191149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764333.1

476 aa

238

476

SNI1_middle

SNI1_C

PF28645 SNI1_middle 99-340 aa PF28650 SNI1_C 356-476 aa

XP_057764334.1

474 aa

237

474

SNI1_middle

SNI1_C

PF28645 SNI1_middle 99-340 aa PF28650 SNI1_C 356-474 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764333.1`	Pfam	`PF28645`	SNI1_middle	Domain	99	340	7.2e-94	314.6	SNI1 middle domain
`XP_057764333.1`	Pfam	`PF28650`	SNI1_C	Domain	356	476	5.7e-44	149.5	SNI1 C-terminal domain
`XP_057764334.1`	Pfam	`PF28645`	SNI1_middle	Domain	99	340	7.1e-94	314.6	SNI1 middle domain
`XP_057764334.1`	Pfam	`PF28650`	SNI1_C	Domain	356	474	3.1e-41	140.6	SNI1 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908350.1
GGCTTCGTATCATCAATAATTTAACGTTGGACATTGAATTTTCCATCCGGGACTTTGGTAATGGCGGGAAAATGTAGTGTTCGTTTAAGAGAAAAACTCACTCCCTGTGATAGGGTTTCAAAATTGGGTAAGATCGAAAGGAAAAATTAAAAATTAAAAATCGCCGGGCAGAGGAGCGCGACAAGATCAGGAAGAATATGAAGAGGCGGACAAGAATCGGAGGCGACGGCGGTTATCAAGGATTGGAAGAGAACACGTTG...

XM_057908351.1
CATCAATAATTTAACGTTGGACATTGAATTTTCCATCCGGGACTTTGGTAATGGCGGGAAAATGTAGTGTTCGTTTAAGAGAAAAACTCACTCCCTGTGATAGGGTTTCAAAATTGGGTAAGATCGAAAGGAAAAATTAAAAATTAAAAATCGCCGGGCAGAGGAGCGCGACAAGATCAGGAAGAATATGAAGAGGCGGACAAGAATCGGAGGCGACGGCGGTTATCAAGGATTGGAAGAGAACACGTTGGCGCTTCTCG...

CDS

2 records

下载 CDS FASTA

LOC130985392
ATGAAGAGGCGGACAAGAATCGGAGGCGACGGCGGTTATCAAGGATTGGAAGAGAACACGTTGGCGCTTCTCGACACCTCCGGTTTCAATACTTCCAAAGTTTCTCACCATCTCGACGACGATCGGCTTGCTTTCCTTGAAGCTGTGCGAACTACTTCTCTTCTACCCGATAATGGAATTGCACCTACTCGGAAAATGCTTGAGGCCATTTTTCATATCATGATTGATGCGGATTCACTTGATTTGATAGTTCAAAGTTA...

Protein

2 records

下载 Protein FASTA

XP_057764333.1
MKRRTRIGGDGGYQGLEENTLALLDTSGFNTSKVSHHLDDDRLAFLEAVRTTSLLPDNGIAPTRKMLEAIFHIMIDADSLDLIVQSYQLLIESDKRFPRLYLSEGEQSDSSSPKVSQFIMVEEAWSPFNFRMDGYDKKGDATDHSRNLVDSSGFHTLIQEIADVSEEVKSGAVEIGFMKKMLLLQYLVTVLEGDFGPRNCAYQENMDWTILRESLLSMLLGSRKIIYKGLIKDSLSIMCNMSQSTVSSEENSYNDKPQGE...

XP_057764334.1
MKRRTRIGGDGGYQGLEENTLALLDTSGFNTSKVSHHLDDDRLAFLEAVRTTSLLPDNGIAPTRKMLEAIFHIMIDADSLDLIVQSYQLLIESDKRFPRLYLSEGEQSDSSSPKVSQFIMVEEAWSPFNFRMDGYDKKGDATDHSRNLVDSSGFHTLIQEIADVSEEVKSGAVEIGFMKKMLLLQYLVTVLEGDFGPRNCAYQENMDWTILRESLLSMLLGSRKIIYKGLIKDSLSIMCNMSQSTVSSEENSYNDKPQGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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