当前解析结果
SmilChr05G000687| 统一新 Gene ID | SmilChr05G000687 |
|---|---|
| 名称 | SmilChr05G000687 |
| 描述 | apoptosis inhibitor 5-like protein API5 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 5203142 - 5209542 / + |
| NCBI Gene ID | LOC130985397 |
|---|---|
| GeneID | 130985397 |
| locus_tag | - |
| NCBI Name | LOC130985397 |
| 原始查询 | SmilChr05G000687 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | apoptosis inhibitor 5-like protein API5 |
| 产物 | apoptosis inhibitor 5-like protein API5 |
| Arabidopsis | AT2G34040 (AT2G34040)Apoptosis inhibitory protein 5 (API5) [Source:NCBI gene (formerly Entrezgene);Acc:817965] identity=67.9; qcov=0.942; evalue=0; confidence=high |
| Rice | Os02g0313400 (API5)- identity=60.1; qcov=0.946; evalue=0; confidence=high |
| GO | GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0043067 (regulation of programmed cell death) |
| KEGG | - |
| Pfam | PF05918 (API5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985397 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057764338.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057764338.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057764338.1 |
| 4 | Nucleolus | 核仁 | 0.20000 | XP_057764338.1 |
| 5 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.20000 | XP_057764338.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:5205773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B73,C12,C74 |
Chr5:5205960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr5:5206007 |
T |
TA |
1bp_insertion | frameshift_variant | 7 | B122,B126,B24,B93,C24,C42,C49 |
Chr5:5207235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr5:5207323 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B78 |
Chr5:5207323 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B78 |
Chr5:5207953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:5208602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr5:5208611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr5:5208736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr5:5208783 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,B97 |
Chr5:5208787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057764338.1PF05918
API5 11-551 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764338.1 |
Pfam | PF05918 |
API5 | Repeat | 11 | 551 | 9.7e-232 | 771.3 | Apoptosis inhibitory protein 5 (API5) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。