当前解析结果
SmilChr05G000690| 统一新 Gene ID | SmilChr05G000690 |
|---|---|
| 名称 | SmilChr05G000690 |
| 描述 | sodium/calcium exchanger NCL-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 5224275 - 5227206 / + |
| NCBI Gene ID | LOC130985399 |
|---|---|
| GeneID | 130985399 |
| locus_tag | - |
| NCBI Name | LOC130985399 |
| 原始查询 | SmilChr05G000690 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sodium/calcium exchanger NCL-like |
| 产物 | sodium/calcium exchanger NCL-like |
| Arabidopsis | AT1G53210 (AT1G53210)sodium/calcium exchanger family protein / calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:841755] identity=36; qcov=0.535; evalue=1.68e-72; confidence=medium |
| Rice | Os01g0212400 (OsEFCAX1)sodium/calcium exchanger NCL1-like [Source:NCBI gene (formerly Entrezgene);Acc:4325568] identity=40.4; qcov=0.455; evalue=1.83e-72; confidence=medium |
| GO | GO:0005509 (calcium ion binding); GO:0006874 (intracellular calcium ion homeostasis); GO:0015369 (calcium:proton antiporter activity); GO:0016020 (membrane); GO:0070588 (calcium ion transmembrane transport) |
| KEGG | - |
| Pfam | PF01699 (Na_Ca_ex); PF13202 (EF-hand_5); PF13499 (EF-hand_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130985399 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057764340.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057764340.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057764340.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057764340.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057764340.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:5224496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,B44,D8 |
Chr5:5224673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr5:5224739 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B73 |
Chr5:5224739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr5:5224807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr5:5224808 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C87 |
Chr5:5225227 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C20 |
Chr5:5225287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:5225373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr5:5225563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr5:5225576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B113,B16,C30,C47 |
Chr5:5225869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B113,B16,C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057764340.1PF13499
EF-hand_7 307-371 aa
PF13202
EF-hand_5 350-368 aa
PF13499
EF-hand_7 429-499 aa
PF13202
EF-hand_5 431-454 aa
PF01699
Na_Ca_ex 554-697 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057764340.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 307 | 371 | 3.4e-23 | 82.5 | EF-hand domain pair |
XP_057764340.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 350 | 368 | 2.2e-08 | 33.9 | EF hand |
XP_057764340.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 429 | 499 | 3.4e-23 | 82.5 | EF-hand domain pair |
XP_057764340.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 431 | 454 | 2.2e-08 | 33.9 | EF hand |
XP_057764340.1 |
Pfam | PF01699 |
Na_Ca_ex | Family | 554 | 697 | 9e-09 | 36.2 | Sodium/calcium exchanger protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。