Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000698`

染色体: Chr05 坐标: 5264372-5266583 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000698`
名称	SmilChr05G000698
描述	magnesium-chelatase subunit ChlI, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5264372 - 5266583 / `-`

ID 对照

NCBI Gene ID	`LOC130985408`
GeneID	`130985408`
locus_tag	`-`
NCBI Name	`LOC130985408`
原始查询	`SmilChr05G000698`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	magnesium-chelatase subunit ChlI, chloroplastic-like
产物	magnesium-chelatase subunit ChlI%2C chloroplastic-like
Arabidopsis	`AT5G45930` (CHLI2) magnesium chelatase i2 [Source:NCBI gene (formerly Entrezgene);Acc:834633] identity=77.9; qcov=1; evalue=0; confidence=high
Rice	`Os03g0563300` (ELL) - identity=87.4; qcov=0.867; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0009570 (chloroplast stroma); GO:0015995 (chlorophyll biosynthetic process); GO:0016851 (magnesium chelatase activity); GO:0016887 (ATP hydrolysis activity)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01078 (Mg_chelatase); PF17863 (AAA_lid_2)
InterPro	-
eggNOG	-
NR	GeneID:130985408

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057764354.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057764354.1`
3	Nucleus	细胞核	0.00000	`XP_057764354.1`
4	Chromosome	染色体	0.00000	`XP_057764354.1`
5	Centromere	着丝粒	0.00000	`XP_057764354.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5264653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,D11
`Chr5:5264900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,D11
`Chr5:5264917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr5:5265163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B107,B128,B32,B61
`Chr5:5265274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B44,D11
`Chr5:5265310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr5:5265370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B83,C75
`Chr5:5265592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,C45
`Chr5:5266100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr5:5266112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764354.1

424 aa

212

424

Mg_chelatase

AAA_lid_2

PF01078 Mg_chelatase 200-270 aa PF17863 AAA_lid_2 349-408 aa

XP_057764355.1

420 aa

210

420

Mg_chelatase

AAA_lid_2

PF01078 Mg_chelatase 196-266 aa PF17863 AAA_lid_2 345-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764354.1`	Pfam	`PF01078`	Mg_chelatase	Domain	200	270	4.2e-11	43.4	Magnesium chelatase, subunit ChlI
`XP_057764354.1`	Pfam	`PF17863`	AAA_lid_2	Domain	349	408	3.8e-19	69.0	AAA lid domain
`XP_057764355.1`	Pfam	`PF01078`	Mg_chelatase	Domain	196	266	4e-11	43.4	Magnesium chelatase, subunit ChlI
`XP_057764355.1`	Pfam	`PF17863`	AAA_lid_2	Domain	345	404	3.7e-19	69.0	AAA lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057908371.1
AGCTAAAAAATAAGAATCCGAACTCAAATTACAAGTAACGTGGGTCGGGAGGAAATCTGATCCTCTTATCTTCACCACACACAACACACGGAGGATACCTCCCATTTGGATGTGGGTCATTCCAATTCCAACAGATTGAAATTCAAGTTACACACACTACACACACTATCTCTTGAGTTGAACATGGCTGGGATAGTCGGAACTTCCTCCACTGCTGCAATCTTTGCCTCGAGGCTCGTTTCTTCTCACTCATCAATAAC...

XM_057908372.1
GGGTCGGGAGGAAATCTGATCCTCTTATCTTCACCACACACAACACACGGAGGATACCTCCCATTTGGATGTGGGTCATTCCAATTCCAACAGATTGAAATTCAAGTTACACACACTACACACACTATCTCTTGAGTTGAACATGGCTGGGATAGTCGGAACTTCCTCCACTGCTGCAATCTTTGCCTCGAGGCTCGTTTCTTCTCACTCATCAATAACTCCCTCTTTCTCCCTCCAACTATCTCCTGGGAGGAAATTCT...

CDS

2 records

下载 CDS FASTA

LOC130985408
ATGGCTGGGATAGTCGGAACTTCCTCCACTGCTGCAATCTTTGCCTCGAGGCTCGTTTCTTCTCACTCATCAATAACTCCCTCTTTCTCCCTCCAACTATCTCCTGGGAGGAAATTCTACGGAGGAGTTGCAGTCCCCTTCAAGAAAGGGCGCTCTCATTTACATGTCTCAATTTCCAATGTCGCCACGTCTCCTGCTCAACAAGAGGTTCAGAAGCTAGCTTCTTCAAAGGAGAACCAGAGGCCAGTTTATCCATTTGC...

LOC130985408
ATGGCTGGGATAGTCGGAACTTCCTCCACTGCTGCAATCTTTGCCTCGAGGCTCGTTTCTTCTCACTCATCAATAACTCCCTCTTTCTCCCTCCAACTATCTCCTGGGCTGAGTTCAGGGAGGAAATTCTACGGAGGAGTTGCAGTCCCCTTCAAGAAAGGGCGCTCTCATTTACATGTCTCAATTTCCAATGTCGCCACGTCTCCTGCTCAACAAGAGGTTCAGAAGCTAGCTTCTTCAAAGGAGAACCAGAGGCCAGT...

Protein

2 records

下载 Protein FASTA

XP_057764354.1
MAGIVGTSSTAAIFASRLVSSHSSITPSFSLQLSPGLSSGRKFYGGVAVPFKKGRSHLHVSISNVATSPAQQEVQKLASSKENQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVYGDPFNSDPEDAEVQGPEVRDKVMKGEQLPVVSTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPA...

XP_057764355.1
MAGIVGTSSTAAIFASRLVSSHSSITPSFSLQLSPGRKFYGGVAVPFKKGRSHLHVSISNVATSPAQQEVQKLASSKENQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVYGDPFNSDPEDAEVQGPEVRDKVMKGEQLPVVSTKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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