Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000713`

染色体: Chr05 坐标: 5389534-5417942 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000713`
名称	SmilChr05G000713
描述	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5389534 - 5417942 / `+`

ID 对照

NCBI Gene ID	`LOC130985424`
GeneID	`130985424`
locus_tag	`-`
NCBI Name	`LOC130985424`
原始查询	`SmilChr05G000713`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic-like
产物	DExH-box ATP-dependent RNA helicase DExH7%2C chloroplastic-like
Arabidopsis	`AT1G58060` (AT1G58060) RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842173] identity=59.7; qcov=1.02; evalue=0; confidence=high
Rice	`Os10g0471350` - identity=43.8; qcov=0.524; evalue=3.35e-164; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF21010 (HA2_C); PF24899 (UBA_DHX29); PF26026 (RNA_hel_CTD)
InterPro	-
eggNOG	-
NR	GeneID:130985424

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057764372.1`
2	Cytoplasm	细胞质	0.60000	`XP_057764372.1`
3	Cytosol	细胞质基质	0.60000	`XP_057764374.1`
4	Chromosome	染色体	0.00000	`XP_057764372.1`
5	Centromere	着丝粒	0.00000	`XP_057764372.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5390184`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B135,B3,C34,C50,C72
`Chr5:5390554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,C45
`Chr5:5390900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:5392722`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B138
`Chr5:5392722`	`AC`	`A`	1bp_deletion	CDS_variant	1	B138
`Chr5:5392754`	`AT`	`A`	1bp_deletion	frameshift_variant	1	A25
`Chr5:5392754`	`AT`	`A`	1bp_deletion	CDS_variant	1	A25
`Chr5:5392862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B40
`Chr5:5393175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr5:5393206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr5:5393269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr5:5393821`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764372.1

1422 aa

711

1422

UBA_DHX29

DEAD

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

RNA_hel_CTD

PF24899 UBA_DHX29 68-120 aa PF00270 DEAD 606-767 aa PF00271 Helicase_C 889-1017 aa PF04408 WHD_HA2 1082-1110 aa PF21010 HA2_C 1114-1179 aa PF07717 OB_NTP_bind 1268-1351 aa PF26026 RNA_hel_CTD 1358-1414 aa

XP_057764373.1

1423 aa

712

1423

UBA_DHX29

DEAD

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

RNA_hel_CTD

XP_057764374.1

1246 aa

623

1246

UBA_DHX29

DEAD

Helicase_C

WHD_HA2

HA2_C

PF24899 UBA_DHX29 68-120 aa PF00270 DEAD 606-767 aa PF00271 Helicase_C 889-1017 aa PF04408 WHD_HA2 1082-1110 aa PF21010 HA2_C 1114-1179 aa

XP_057764376.1

1194 aa

597

1194

UBA_DHX29

DEAD

Helicase_C

WHD_HA2

HA2_C

PF24899 UBA_DHX29 68-120 aa PF00270 DEAD 606-767 aa PF00271 Helicase_C 889-1017 aa PF04408 WHD_HA2 1082-1110 aa PF21010 HA2_C 1114-1179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764372.1`	Pfam	`PF24899`	UBA_DHX29	Domain	68	120	6.5e-15	55.4	ATP-dependent RNA helicase DHX29, UBA domain
`XP_057764372.1`	Pfam	`PF00270`	DEAD	Domain	606	767	1.5e-11	45.1	DEAD/DEAH box helicase
`XP_057764372.1`	Pfam	`PF00271`	Helicase_C	Domain	889	1017	9.9e-11	42.6	Helicase conserved C-terminal domain
`XP_057764372.1`	Pfam	`PF04408`	WHD_HA2	Domain	1082	1110	2.9e-07	31.1	Helicase associated domain (HA2), winged-helix
`XP_057764372.1`	Pfam	`PF21010`	HA2_C	Domain	1114	1179	1.5e-10	42.2	Helicase associated domain (HA2), ratchet-like
`XP_057764372.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	1268	1351	8.8e-22	77.8	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057764372.1`	Pfam	`PF26026`	RNA_hel_CTD	Domain	1358	1414	1.3e-12	48.0	C-terminal domain in RNA helicases
`XP_057764373.1`	Pfam	`PF24899`	UBA_DHX29	Domain	68	120	6.5e-15	55.4	ATP-dependent RNA helicase DHX29, UBA domain
`XP_057764373.1`	Pfam	`PF00270`	DEAD	Domain	606	767	1.5e-11	45.1	DEAD/DEAH box helicase
`XP_057764373.1`	Pfam	`PF00271`	Helicase_C	Domain	889	1017	9.9e-11	42.6	Helicase conserved C-terminal domain
`XP_057764373.1`	Pfam	`PF04408`	WHD_HA2	Domain	1082	1110	2.9e-07	31.1	Helicase associated domain (HA2), winged-helix
`XP_057764373.1`	Pfam	`PF21010`	HA2_C	Domain	1114	1179	1.5e-10	42.2	Helicase associated domain (HA2), ratchet-like
`XP_057764373.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	1269	1352	9.3e-22	77.7	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057764373.1`	Pfam	`PF26026`	RNA_hel_CTD	Domain	1359	1415	1.3e-12	48.0	C-terminal domain in RNA helicases
`XP_057764374.1`	Pfam	`PF24899`	UBA_DHX29	Domain	68	120	5.5e-15	55.6	ATP-dependent RNA helicase DHX29, UBA domain
`XP_057764374.1`	Pfam	`PF00270`	DEAD	Domain	606	767	1.2e-11	45.3	DEAD/DEAH box helicase
`XP_057764374.1`	Pfam	`PF00271`	Helicase_C	Domain	889	1017	9.2e-11	42.7	Helicase conserved C-terminal domain
`XP_057764374.1`	Pfam	`PF04408`	WHD_HA2	Domain	1082	1110	2.4e-07	31.3	Helicase associated domain (HA2), winged-helix
`XP_057764374.1`	Pfam	`PF21010`	HA2_C	Domain	1114	1179	1.1e-10	42.5	Helicase associated domain (HA2), ratchet-like
`XP_057764376.1`	Pfam	`PF24899`	UBA_DHX29	Domain	68	120	5.2e-15	55.7	ATP-dependent RNA helicase DHX29, UBA domain
`XP_057764376.1`	Pfam	`PF00270`	DEAD	Domain	606	767	1.1e-11	45.4	DEAD/DEAH box helicase
`XP_057764376.1`	Pfam	`PF00271`	Helicase_C	Domain	889	1017	8.6e-11	42.8	Helicase conserved C-terminal domain
`XP_057764376.1`	Pfam	`PF04408`	WHD_HA2	Domain	1082	1110	2.3e-07	31.4	Helicase associated domain (HA2), winged-helix
`XP_057764376.1`	Pfam	`PF21010`	HA2_C	Domain	1114	1179	1e-10	42.6	Helicase associated domain (HA2), ratchet-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057908393.1
ATGGAGATGGAGAAAAAGAAATGGCGCCAAAGAAGGATCATCAAAAGCGTAAGGCATCGTCATCGAAGGGGAAGGCCTCCTCCTCCACCGGTCCCAAGCTCCAATTATCGGCCGAGAATGAGAACCGCCTCCGCCGCCTTCTTCTCAGCTCTGGAAGACCGGGTGCTTCTCTGGCGCCATCCGAAGACATTCTTTCTCTCTCTAAAGAGCAGAGAGCAAAAAGGCTCCGCTCGGTCTATGAGAAGCTGTCTTGCGAGGGG...

XM_057908390.1
GTACTATTGAAATCTTGATTTATAGTATAATTTCCTACGTTGATCTTTCAAAAAAAAGAAAAAGATATAGACTTGAGGGAACTTTATCGATGCAAAGTCTGTTAATGCCCAAAGGAGTTGCTATCAGTATACTACTATCACATTCAGAGCGCCTAAATTAGTGGTTCCCACCTCAATTTCGTTCTCTCCAAATCGCTGCTTAGAAATGGCGCCAAAGAAGGATCATCAAAAGCGTAAGGCATCGTCATCGAAGGGGAAGG...

CDS

4 records

下载 CDS FASTA

LOC130985424
ATGGCGCCAAAGAAGGATCATCAAAAGCGTAAGGCATCGTCATCGAAGGGGAAGGCCTCCTCCTCCACCGGTCCCAAGCTCCAATTATCGGCCGAGAATGAGAACCGCCTCCGCCGCCTTCTTCTCAGCTCTGGAAGACCGGGTGCTTCTCTGGCGCCATCCGAAGACATTCTTTCTCTCTCTAAAGAGCAGAGAGCAAAAAGGCTCCGCTCGGTCTATGAGAAGCTGTCTTGCGAGGGGTTCAAAGATGACCAAATTGA...

Protein

4 records

下载 Protein FASTA

XP_057764372.1
MAPKKDHQKRKASSSKGKASSSTGPKLQLSAENENRLRRLLLSSGRPGASLAPSEDILSLSKEQRAKRLRSVYEKLSCEGFKDDQIELVLSILKESATYEAALDWLCLNIPGNELPPKFSSGGSLSTSIGSVGVISTAREDWVPSKDSLPDPVGEKEQGSLKIKELRDDAILDSAQRSQADWIRQYMERQEEDESDSLDMYSMENASSEKALEPRSNYESIIDDYNAARLQAANAKDRGDKKSQEEAGFIIRKLKKEISA...

XP_057764373.1
MAPKKDHQKRKASSSKGKASSSTGPKLQLSAENENRLRRLLLSSGRPGASLAPSEDILSLSKEQRAKRLRSVYEKLSCEGFKDDQIELVLSILKESATYEAALDWLCLNIPGNELPPKFSSGGSLSTSIGSVGVISTAREDWVPSKDSLPDPVGEKEQGSLKIKELRDDAILDSAQRSQADWIRQYMERQEEDESDSLDMYSMENASSEKALEPRSNYESIIDDYNAARLQAANAKDRGDKKSQEEAGFIIRKLKKEISA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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