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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000717

染色体: Chr05 坐标: 5462755-5472390 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000717
名称SmilChr05G000717
描述short-chain dehydrogenase reductase 3a-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向5462755 - 5472390 / -

ID 对照

NCBI Gene IDLOC130985427
GeneID130985427
locus_tag-
NCBI NameLOC130985427
原始查询SmilChr05G000717

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述short-chain dehydrogenase reductase 3a-like
产物short-chain dehydrogenase reductase 3a-like
ArabidopsisAT4G03140 (AT4G03140)
NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828065]
identity=68.8; qcov=0.908; evalue=6.15e-132; confidence=high
RiceOs07g0664400
-
identity=55.2; qcov=0.891; evalue=1.79e-100; confidence=high
GOGO:0016491 (oxidoreductase activity)
KEGG-
PfamPF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2)
InterPro-
eggNOG-
NRGeneID:130985427

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057764379.1
2 Mitochondrion matrix 线粒体基质 1.00000 XP_057764379.1
3 Nucleus 细胞核 0.00000 XP_057764379.1
4 Chromosome 染色体 0.00000 XP_057764379.1
5 Centromere 着丝粒 0.00000 XP_057764379.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:5464192 G A EMS_canonical_SNV CDS_variant 1 B25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764379.1
308 aa
N
1
154
308
adh_short
KR
adh_short_C2
C
PF00106 adh_short 47-235 aa PF08659 KR 49-199 aa PF13561 adh_short_C2 53-295 aa
XP_057764380.1
302 aa
N
1
151
302
adh_short
KR
adh_short_C2
C
PF00106 adh_short 41-229 aa PF08659 KR 43-193 aa PF13561 adh_short_C2 47-289 aa
XP_057764381.1
302 aa
N
1
151
302
adh_short
KR
adh_short_C2
C
PF00106 adh_short 41-229 aa PF08659 KR 43-193 aa PF13561 adh_short_C2 47-289 aa
XP_057764382.1
295 aa
N
1
148
295
adh_short
KR
adh_short_C2
C
PF00106 adh_short 34-222 aa PF08659 KR 36-186 aa PF13561 adh_short_C2 40-282 aa
XP_057764383.1
295 aa
N
1
148
295
adh_short
KR
adh_short_C2
C
PF00106 adh_short 34-222 aa PF08659 KR 36-186 aa PF13561 adh_short_C2 40-282 aa
XP_057764384.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764386.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764387.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764388.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764389.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764390.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764391.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
XP_057764392.1
293 aa
N
1
146
293
adh_short
KR
adh_short_C2
C
PF00106 adh_short 32-220 aa PF08659 KR 34-184 aa PF13561 adh_short_C2 38-280 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764379.1 Pfam PF00106 adh_short Domain 47 235 2.4e-51 174.7 short chain dehydrogenase
XP_057764379.1 Pfam PF08659 KR Family 49 199 7.2e-10 39.8 KR domain
XP_057764379.1 Pfam PF13561 adh_short_C2 Domain 53 295 1.9e-61 208.4 Enoyl-(Acyl carrier protein) reductase
XP_057764380.1 Pfam PF00106 adh_short Domain 41 229 2.2e-51 174.8 short chain dehydrogenase
XP_057764380.1 Pfam PF08659 KR Family 43 193 6.8e-10 39.9 KR domain
XP_057764380.1 Pfam PF13561 adh_short_C2 Domain 47 289 1.8e-61 208.5 Enoyl-(Acyl carrier protein) reductase
XP_057764381.1 Pfam PF00106 adh_short Domain 41 229 2.2e-51 174.8 short chain dehydrogenase
XP_057764381.1 Pfam PF08659 KR Family 43 193 6.8e-10 39.9 KR domain
XP_057764381.1 Pfam PF13561 adh_short_C2 Domain 47 289 1.8e-61 208.5 Enoyl-(Acyl carrier protein) reductase
XP_057764382.1 Pfam PF00106 adh_short Domain 34 222 2.1e-51 174.9 short chain dehydrogenase
XP_057764382.1 Pfam PF08659 KR Family 36 186 6.2e-10 40.0 KR domain
XP_057764382.1 Pfam PF13561 adh_short_C2 Domain 40 282 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764383.1 Pfam PF00106 adh_short Domain 34 222 2.1e-51 174.9 short chain dehydrogenase
XP_057764383.1 Pfam PF08659 KR Family 36 186 6.2e-10 40.0 KR domain
XP_057764383.1 Pfam PF13561 adh_short_C2 Domain 40 282 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764384.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764384.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764384.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764386.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764386.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764386.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764387.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764387.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764387.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764388.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764388.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764388.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764389.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764389.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764389.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764390.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764390.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764390.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764391.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764391.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764391.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase
XP_057764392.1 Pfam PF00106 adh_short Domain 32 220 2.1e-51 174.9 short chain dehydrogenase
XP_057764392.1 Pfam PF08659 KR Family 34 184 6.3e-10 40.0 KR domain
XP_057764392.1 Pfam PF13561 adh_short_C2 Domain 38 280 1.6e-61 208.6 Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

13 records

下载 cDNA FASTA
XM_057908400.1
TTCCACACCTACCACAATCATACTTTCATCATGACCAATGCACATGTATCATGTCGGCCACCATCTACCACTTTATACCATGCCCTTTATTCCCATACTTCTATCAATTCATAAGTTTTCTCTCGCCCCCAAGAATTTCATCAGCTGGGATCGTCCATCAAATTAACAACAGCGGGATCTTTTCATAAAAGGCTTTGTGGTCCAAGGGGATTAGCGCTGCTTTCCCAAGACATGTTTATATGTGAATGATCTTCAGGTTT...
XM_057908397.1
TTCCACACCTACCACAATCATACTTTCATCATGACCAATGCACATGTATCATGTCGGCCACCATCTACCACTTTATACCATGCCCTTTATTCCCATACTTCTATCAATTCATAAGTTTTCTCTCGCCCCCAAGAATTTCATCAGCTGGGATCGTCCATCAAATTAACAACAGCGGGATCTTTTCATAAAAGGCTTTGTGGTCCAAGGGGATTAGCGCTGCTTTCCCAAGACATGTTTATATGTGAATGATCTTCAGGTTT...

CDS

13 records

下载 CDS FASTA
LOC130985427
ATGATCTTCAGGTTTTGCCTATCTAGAAAGTTGTCCGGTGCAAGAGTTTTGCTGACTCGGAGATGGCTTTCTCAAGACACAACAAGCAAACTGGAAGGCAAGGTAGCTCTAATTACAGGGGCAGCAAGTGGTATAGGCAAAGAAACAGCAACCAAATTCATCAACAATGGTGCCAAAGTAGTGCTAGCCGACATCCAGAAAGATGAGGGCCACCACACGACCCTGGAGCTCGGTCAGAATGCTGCCTTCGTTGCATGCGA...
LOC130985427
ATGATCTTCAGGTTTTGCCTATCTAGAAAGTTGTCCGGTGCAAGAGTTTTGCTGACTCGGAGATGGCTTTCTCAAGACACAACAAGCAAACTGGAAGGCAAGGTAGCTCTAATTACAGGGGCAGCAAGTGGTATAGGCAAAGAAACAGCAACCAAATTCATCAACAATGGTGCCAAAGTAGTGCTAGCCGACATCCAGAAAGATGAGGGCCACCACACGACCCTGGAGCTCGGTCAGAATGCTGCCTTCGTTGCATGCGA...

Protein

13 records

下载 Protein FASTA
XP_057764379.1
MFSGWLASADGTELRMLRTPFRKLSGARVLLTRRWLSQDTTSKLEGKVALITGAASGIGKETATKFINNGAKVVLADIQKDEGHHTTLELGQNAAFVACDVTKESDVSDAVDFTVSKFGHLDIMYNNAGIACHTPPSIVDLDLASFDRVMAINVRGVVSGIKHGARVMIPRERGVILCTASVTGLMGGLAQHTYSVSKSGVIGIVRSVASELCRHGIRVNCISPMAIPTPFVMDEIKKYYPEVDPHRLVKMVHDFSVLKG...
XP_057764380.1
MIFRFCLSRMLRTPFRKLSGARVLLTRRWLSQDTTSKLEGKVALITGAASGIGKETATKFINNGAKVVLADIQKDEGHHTTLELGQNAAFVACDVTKESDVSDAVDFTVSKFGHLDIMYNNAGIACHTPPSIVDLDLASFDRVMAINVRGVVSGIKHGARVMIPRERGVILCTASVTGLMGGLAQHTYSVSKSGVIGIVRSVASELCRHGIRVNCISPMAIPTPFVMDEIKKYYPEVDPHRLVKMVHDFSVLKGAVCEPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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