Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G000729`

染色体: Chr05 坐标: 5563551-5565055 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G000729`
名称	SmilChr05G000729
描述	rac-like GTP-binding protein RAC13
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	5563551 - 5565055 / `+`

ID 对照

NCBI Gene ID	`LOC130985441`
GeneID	`130985441`
locus_tag	`-`
NCBI Name	`LOC130985441`
原始查询	`SmilChr05G000729`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rac-like GTP-binding protein RAC13
产物	rac-like GTP-binding protein RAC13
Arabidopsis	`AT4G35020` (RAC3) RAC-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:829654] identity=86.2; qcov=0.923; evalue=1.62e-121; confidence=high
Rice	`Os02g0312600` (OSRAC7) - identity=87.8; qcov=1; evalue=6.49e-129; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005634 (nucleus); GO:0005856 (cytoskeleton); GO:0005886 (plasma membrane); GO:0005938 (cell cortex); GO:0007015 (actin filament organization); GO:0007163 (establishment or maintenance of cell polarity); GO:0007264 (small GTPase-mediated signal transduction); GO:0008360 (regulation of cell shape); GO:0019901 (protein kinase binding); GO:0030865 (cortical cytoskeleton organization); GO:0031410 (cytoplasmic vesicle); GO:0032956 (regulation of actin cytoskeleton organization); GO:0042995 (cell projection)
KEGG	smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil04620 (Toll-like receptor signaling pathway - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF00071 (Ras); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:130985441

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057764406.1`
2	Cytoplasm	细胞质	0.40000	`XP_057764406.1`
3	Cytosol	细胞质基质	0.20000	`XP_057764406.1`
4	Cell projection	细胞突起	0.20000	`XP_057764406.1`
5	Nucleus	细胞核	0.00000	`XP_057764406.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:5563885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C23,C71
`Chr5:5564055`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B135,C23,C71
`Chr5:5564399`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:5564892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057764406.1

196 aa

196

Roc

Ras

PF08477 Roc 8-121 aa PF00071 Ras 8-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057764406.1`	Pfam	`PF08477`	Roc	Domain	8	121	9.1e-24	84.7	Ras of Complex, Roc, domain of DAPkinase
`XP_057764406.1`	Pfam	`PF00071`	Ras	Domain	8	177	2.7e-51	174.1	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057908423.1
CAGAGTAAGCAACCTTCTTCCTTTCCTTATTCATTTTTCTTTCTCCATCGCTTCTTCAACACATAACCAACGAACTCTCACCACCACACCTAATATCGTTGCCACCCAATCTGTCTCTGTCCTTAAACTCAAAGAAAACTAAAAGTCCTGTAACAAATCATTTTCAATTTCTCCCTTTATACGTAGAAATCTCACATCAAACCGACTGTGATATATAAAAAAGGAAGAGTTAGATGCATAAGCAAGTCAAGAGAAAATAA...

CDS

1 records

下载 CDS FASTA

LOC130985441
ATGAGTACCGCTAGATTCATCAAGTGTGTGACCGTGGGCGACGGCGCCGTCGGGAAAACGTGCATGCTCATTTCTTACACTAGTAATACTTTCCCAACGGATTATGTTCCGACGGTGTTCGACAACTTTAGCGCCAATGTCGTCGTCGATGGAAATACGGTCAACATTGGCCTCTGGGATACCGCAGGGCAAGAAGATTACAACAGGCTGCGCCCTCTAAGTTATAGAGGAGCTGATGTGTTTTTGCTGGCGTTTTCTCT...

Protein

1 records

下载 Protein FASTA

XP_057764406.1
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNIGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYSPNVPIVLVGTKMDLREDKQFLCDHPAAVPITNAQGEELKKMIGAVAYIECSAKTQQNVKAVFDTAIKVVLRPPKMKKKARKSRRCNFL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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