Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G000744

染色体: Chr05 坐标: 5728291-5736450 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G000744
名称SmilChr05G000744
描述uncharacterized SmilChr05G000744
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向5728291 - 5736450 / +

ID 对照

NCBI Gene IDLOC130985457
GeneID130985457
locus_tag-
NCBI NameLOC130985457
原始查询SmilChr05G000744

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Guanylate-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:834648]; symbol=AT5G46070; hit=AT5G46070; species=arabidopsis; confidence=high
产物Guanylate-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:834648]; symbol=AT5G46070; hit=AT5G46070; species=arabidopsis; confidence=high
ArabidopsisAT5G46070 (AT5G46070)
Guanylate-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:834648]
identity=60.6; qcov=1.01; evalue=0; confidence=high
RiceOs02g0307000
-
identity=60.2; qcov=0.97; evalue=0; confidence=high
GOGO:0003924 (GTPase activity); GO:0005525 (GTP binding)
KEGG-
PfamPF02263 (GBP); PF02841 (GBP_C)
InterPro-
eggNOG-
NRGeneID:130985457

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.40000 XP_057764426.1
2 Nucleus membrane 核膜 0.40000 XP_057764426.1
3 Cytoskeleton 细胞骨架 0.40000 XP_057764426.1
4 Phragmoplast Phragmoplast 0.40000 XP_057764426.1
5 Spindle Spindle 0.40000 XP_057764426.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:5728455 C T EMS_canonical_SNV CDS_variant 2 C44,D10
Chr5:5730951 C T EMS_canonical_SNV CDS_variant 1 B104
Chr5:5732283 C T EMS_canonical_SNV CDS_variant 1 B79
Chr5:5732410 C T EMS_canonical_SNV CDS_variant 1 B50
Chr5:5732459 G A EMS_canonical_SNV CDS_variant 1 D11
Chr5:5732793 C T EMS_canonical_SNV CDS_variant 2 B7,B73
Chr5:5732798 C T EMS_canonical_SNV CDS_variant 1 B104
Chr5:5733497 G A EMS_canonical_SNV CDS_variant 1 B79
Chr5:5733728 C T EMS_canonical_SNV CDS_variant 1 D10
Chr5:5733736 C T EMS_canonical_SNV CDS_variant 3 B88,C38,C65
Chr5:5733769 C T EMS_canonical_SNV CDS_variant 1 C59
Chr5:5733782 G A EMS_canonical_SNV CDS_variant 1 C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057764426.1
1066 aa
N
1
533
1066
GBP
GBP_C
C
PF02263 GBP 47-304 aa PF02841 GBP_C 311-611 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057764426.1 Pfam PF02263 GBP Domain 47 304 7.3e-62 209.6 Guanylate-binding protein, N-terminal domain
XP_057764426.1 Pfam PF02841 GBP_C Domain 311 611 6.9e-33 115.0 Guanylate-binding protein, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057908443.1
TTTCAATATCAGTTGGCAAGGTCTTTTTTCTTTCTTCTCTTTAGTTTCCCTCTCTTCCATTTATAAAAAGTGAGTCGAAGCGCTTTCCCACATTTCGCCTCACAATCTACAAATTCAAAGGAAAAATTCGATAATATGATGCGATTATTCGGCCGAGGCTCGGCCGGAGAATCTCCGCACGCGGCGTCTCCGCCGACTCCACTTCCCGCCGCTTCGCCCAATATGTCTGCCGGCCCGGCGAGGCCAATCCGCCTTGTGTA...

CDS

1 records

下载 CDS FASTA
LOC130985457
ATGATGCGATTATTCGGCCGAGGCTCGGCCGGAGAATCTCCGCACGCGGCGTCTCCGCCGACTCCACTTCCCGCCGCTTCGCCCAATATGTCTGCCGGCCCGGCGAGGCCAATCCGCCTTGTGTACACCGACGAGAAGGGTAGGTTTCACATGGATCCAGAGGCGGTGGCGCTGCTGCAGTTGGTGAAGCAGCCCCTTGGGGTGGTTTCCGTCTGTGGCCGCTCGCGTCAAGGCAAAAGCTTTATATTAAATCAGCTTCT...

Protein

1 records

下载 Protein FASTA
XP_057764426.1
MMRLFGRGSAGESPHAASPPTPLPAASPNMSAGPARPIRLVYTDEKGRFHMDPEAVALLQLVKQPLGVVSVCGRSRQGKSFILNQLLGRSSGFQVASTHRPCTKGLWLWSTPIRRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTEMTKHIRVRASGGRSTASELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLELALRPVQGDGRDVSAKNEIRESIRALFPDRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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